Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2720

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2719 and PfGW456L13_2720 are separated by 56 nucleotidesPfGW456L13_2720 and PfGW456L13_2721 are separated by 248 nucleotidesPfGW456L13_2721 and PfGW456L13_2722 are separated by 236 nucleotides PfGW456L13_2719 - Multidrug resistance protein A, at 3,016,351 to 3,017,448 _2719 PfGW456L13_2720 - FIG01074225: hypothetical protein, at 3,017,505 to 3,019,037 _2720 PfGW456L13_2721 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 3,019,286 to 3,019,531 _2721 PfGW456L13_2722 - hypothetical protein, at 3,019,768 to 3,020,460 _2722 Position (kb) 3017 3018 3019 3020Strain fitness (log2 ratio) -2 -1 0 1 2at 3016.534 kb on + strand, within PfGW456L13_2719at 3016.534 kb on + strand, within PfGW456L13_2719at 3016.535 kb on - strand, within PfGW456L13_2719at 3016.535 kb on - strand, within PfGW456L13_2719at 3016.535 kb on - strand, within PfGW456L13_2719at 3016.579 kb on + strand, within PfGW456L13_2719at 3016.580 kb on - strand, within PfGW456L13_2719at 3016.580 kb on - strand, within PfGW456L13_2719at 3016.580 kb on - strand, within PfGW456L13_2719at 3016.580 kb on - strand, within PfGW456L13_2719at 3016.657 kb on + strand, within PfGW456L13_2719at 3016.965 kb on - strand, within PfGW456L13_2719at 3017.052 kb on - strand, within PfGW456L13_2719at 3017.193 kb on + strand, within PfGW456L13_2719at 3017.194 kb on - strand, within PfGW456L13_2719at 3017.194 kb on - strand, within PfGW456L13_2719at 3017.592 kb on + strandat 3017.592 kb on + strandat 3017.592 kb on + strandat 3017.592 kb on + strandat 3017.592 kb on + strandat 3017.592 kb on + strandat 3017.592 kb on + strandat 3017.593 kb on - strandat 3017.593 kb on - strandat 3017.631 kb on + strandat 3017.632 kb on - strandat 3018.114 kb on + strand, within PfGW456L13_2720at 3018.114 kb on + strand, within PfGW456L13_2720at 3018.114 kb on + strand, within PfGW456L13_2720at 3018.114 kb on + strand, within PfGW456L13_2720at 3018.114 kb on + strand, within PfGW456L13_2720at 3018.115 kb on - strand, within PfGW456L13_2720at 3018.115 kb on - strand, within PfGW456L13_2720at 3018.115 kb on - strand, within PfGW456L13_2720at 3018.441 kb on + strand, within PfGW456L13_2720at 3019.024 kb on + strandat 3019.024 kb on + strandat 3019.025 kb on - strandat 3019.085 kb on + strandat 3019.103 kb on + strandat 3019.149 kb on - strandat 3019.197 kb on + strandat 3019.197 kb on + strandat 3019.197 kb on + strandat 3019.198 kb on - strandat 3019.577 kb on + strandat 3019.593 kb on + strandat 3019.695 kb on + strandat 3019.695 kb on + strandat 3019.695 kb on + strandat 3019.695 kb on + strandat 3019.695 kb on + strandat 3019.695 kb on + strandat 3019.695 kb on + strandat 3019.695 kb on + strandat 3019.696 kb on - strandat 3019.696 kb on - strandat 3019.696 kb on - strandat 3019.696 kb on - strandat 3019.696 kb on - strandat 3019.696 kb on - strandat 3019.696 kb on - strandat 3019.696 kb on - strandat 3019.696 kb on - strandat 3019.744 kb on + strandat 3019.744 kb on + strandat 3019.744 kb on + strandat 3019.745 kb on - strandat 3019.745 kb on - strandat 3019.745 kb on - strandat 3019.745 kb on - strandat 3019.745 kb on - strandat 3019.824 kb on - strandat 3019.968 kb on - strand, within PfGW456L13_2722at 3019.968 kb on - strand, within PfGW456L13_2722at 3019.968 kb on - strand, within PfGW456L13_2722at 3019.968 kb on - strand, within PfGW456L13_2722at 3019.982 kb on + strand, within PfGW456L13_2722at 3019.982 kb on + strand, within PfGW456L13_2722at 3019.982 kb on + strand, within PfGW456L13_2722

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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3,016,534 + PfGW456L13_2719 0.17 +1.5
3,016,534 + PfGW456L13_2719 0.17 +0.5
3,016,535 - PfGW456L13_2719 0.17 -0.1
3,016,535 - PfGW456L13_2719 0.17 +1.5
3,016,535 - PfGW456L13_2719 0.17 -0.9
3,016,579 + PfGW456L13_2719 0.21 -0.0
3,016,580 - PfGW456L13_2719 0.21 -0.8
3,016,580 - PfGW456L13_2719 0.21 +0.3
3,016,580 - PfGW456L13_2719 0.21 +0.9
3,016,580 - PfGW456L13_2719 0.21 -0.4
3,016,657 + PfGW456L13_2719 0.28 +0.9
3,016,965 - PfGW456L13_2719 0.56 +0.1
3,017,052 - PfGW456L13_2719 0.64 +0.7
3,017,193 + PfGW456L13_2719 0.77 +0.2
3,017,194 - PfGW456L13_2719 0.77 -1.7
3,017,194 - PfGW456L13_2719 0.77 -0.3
3,017,592 + -0.3
3,017,592 + -0.0
3,017,592 + -1.9
3,017,592 + +1.2
3,017,592 + -1.1
3,017,592 + +0.3
3,017,592 + +0.1
3,017,593 - +0.2
3,017,593 - -1.8
3,017,631 + +0.4
3,017,632 - +0.3
3,018,114 + PfGW456L13_2720 0.40 -0.5
3,018,114 + PfGW456L13_2720 0.40 -0.7
3,018,114 + PfGW456L13_2720 0.40 +0.6
3,018,114 + PfGW456L13_2720 0.40 +1.2
3,018,114 + PfGW456L13_2720 0.40 -0.4
3,018,115 - PfGW456L13_2720 0.40 -0.6
3,018,115 - PfGW456L13_2720 0.40 +0.2
3,018,115 - PfGW456L13_2720 0.40 +1.8
3,018,441 + PfGW456L13_2720 0.61 -0.1
3,019,024 + -1.8
3,019,024 + -0.5
3,019,025 - +0.4
3,019,085 + -0.8
3,019,103 + -0.0
3,019,149 - -0.0
3,019,197 + +0.2
3,019,197 + +0.5
3,019,197 + +0.4
3,019,198 - -0.3
3,019,577 + +0.3
3,019,593 + +0.9
3,019,695 + -1.4
3,019,695 + -0.4
3,019,695 + +2.5
3,019,695 + -1.1
3,019,695 + +1.1
3,019,695 + -0.9
3,019,695 + +0.9
3,019,695 + +0.2
3,019,696 - -0.2
3,019,696 - +0.9
3,019,696 - -1.1
3,019,696 - -0.2
3,019,696 - -0.1
3,019,696 - -2.4
3,019,696 - +1.6
3,019,696 - -0.5
3,019,696 - -1.8
3,019,744 + -0.5
3,019,744 + +0.2
3,019,744 + +0.5
3,019,745 - -0.4
3,019,745 - -0.1
3,019,745 - +0.3
3,019,745 - -1.6
3,019,745 - -1.1
3,019,824 - -0.5
3,019,968 - PfGW456L13_2722 0.29 +0.5
3,019,968 - PfGW456L13_2722 0.29 +1.1
3,019,968 - PfGW456L13_2722 0.29 +1.0
3,019,968 - PfGW456L13_2722 0.29 +1.0
3,019,982 + PfGW456L13_2722 0.31 -1.1
3,019,982 + PfGW456L13_2722 0.31 +1.3
3,019,982 + PfGW456L13_2722 0.31 +0.9

Or see this region's nucleotide sequence