Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1827

Experiment: motility

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1825 and B158DRAFT_1826 are separated by 99 nucleotidesB158DRAFT_1826 and B158DRAFT_1827 are separated by 330 nucleotidesB158DRAFT_1827 and B158DRAFT_1828 overlap by 4 nucleotidesB158DRAFT_1828 and B158DRAFT_1829 are separated by 222 nucleotides B158DRAFT_1825: B158DRAFT_1825 - hypothetical protein, at 1,925,632 to 1,925,985 _1825 B158DRAFT_1826: B158DRAFT_1826 - Cold shock proteins, at 1,926,085 to 1,926,291 _1826 B158DRAFT_1827: B158DRAFT_1827 - Domain of unknown function (DU1801)., at 1,926,622 to 1,927,050 _1827 B158DRAFT_1828: B158DRAFT_1828 - hypothetical protein, at 1,927,047 to 1,927,217 _1828 B158DRAFT_1829: B158DRAFT_1829 - thioredoxin-disulfide reductase, at 1,927,440 to 1,928,387 _1829 Position (kb) 1926 1927 1928Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1925.681 kb on + strand, within B158DRAFT_1825at 1925.681 kb on + strand, within B158DRAFT_1825at 1925.681 kb on + strand, within B158DRAFT_1825at 1925.703 kb on - strand, within B158DRAFT_1825at 1925.734 kb on - strand, within B158DRAFT_1825at 1925.776 kb on - strand, within B158DRAFT_1825at 1925.776 kb on - strand, within B158DRAFT_1825at 1925.839 kb on + strand, within B158DRAFT_1825at 1925.842 kb on - strand, within B158DRAFT_1825at 1925.849 kb on - strand, within B158DRAFT_1825at 1925.877 kb on - strand, within B158DRAFT_1825at 1925.894 kb on + strand, within B158DRAFT_1825at 1925.894 kb on + strand, within B158DRAFT_1825at 1925.902 kb on - strand, within B158DRAFT_1825at 1925.923 kb on + strand, within B158DRAFT_1825at 1925.923 kb on + strand, within B158DRAFT_1825at 1926.148 kb on + strand, within B158DRAFT_1826at 1926.181 kb on + strand, within B158DRAFT_1826at 1926.204 kb on - strand, within B158DRAFT_1826at 1926.307 kb on - strandat 1926.354 kb on - strandat 1926.418 kb on + strandat 1926.548 kb on + strandat 1926.601 kb on - strandat 1926.603 kb on + strandat 1926.603 kb on + strandat 1926.611 kb on - strandat 1926.611 kb on - strandat 1926.613 kb on + strandat 1926.621 kb on - strandat 1926.621 kb on - strandat 1926.621 kb on - strandat 1926.656 kb on + strandat 1926.664 kb on - strandat 1926.670 kb on - strand, within B158DRAFT_1827at 1926.684 kb on + strand, within B158DRAFT_1827at 1926.740 kb on + strand, within B158DRAFT_1827at 1926.743 kb on - strand, within B158DRAFT_1827at 1926.748 kb on - strand, within B158DRAFT_1827at 1926.748 kb on - strand, within B158DRAFT_1827at 1926.785 kb on + strand, within B158DRAFT_1827at 1926.834 kb on - strand, within B158DRAFT_1827at 1926.845 kb on + strand, within B158DRAFT_1827at 1926.853 kb on - strand, within B158DRAFT_1827at 1926.853 kb on - strand, within B158DRAFT_1827at 1926.853 kb on - strand, within B158DRAFT_1827at 1926.853 kb on - strand, within B158DRAFT_1827at 1926.948 kb on - strand, within B158DRAFT_1827at 1926.953 kb on - strand, within B158DRAFT_1827at 1927.044 kb on - strandat 1927.046 kb on + strandat 1927.115 kb on + strand, within B158DRAFT_1828at 1927.131 kb on + strand, within B158DRAFT_1828at 1927.206 kb on - strandat 1927.231 kb on + strandat 1927.244 kb on + strandat 1927.306 kb on - strandat 1927.376 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction motility
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1,925,681 + B158DRAFT_1825 0.14 +1.3
1,925,681 + B158DRAFT_1825 0.14 +0.2
1,925,681 + B158DRAFT_1825 0.14 -0.3
1,925,703 - B158DRAFT_1825 0.20 -0.4
1,925,734 - B158DRAFT_1825 0.29 -1.1
1,925,776 - B158DRAFT_1825 0.41 -0.3
1,925,776 - B158DRAFT_1825 0.41 -1.6
1,925,839 + B158DRAFT_1825 0.58 -0.6
1,925,842 - B158DRAFT_1825 0.59 +1.2
1,925,849 - B158DRAFT_1825 0.61 +0.7
1,925,877 - B158DRAFT_1825 0.69 -0.7
1,925,894 + B158DRAFT_1825 0.74 +0.2
1,925,894 + B158DRAFT_1825 0.74 -0.8
1,925,902 - B158DRAFT_1825 0.76 -2.2
1,925,923 + B158DRAFT_1825 0.82 -1.2
1,925,923 + B158DRAFT_1825 0.82 +0.3
1,926,148 + B158DRAFT_1826 0.30 -2.7
1,926,181 + B158DRAFT_1826 0.46 -0.8
1,926,204 - B158DRAFT_1826 0.57 -1.7
1,926,307 - -0.5
1,926,354 - -3.7
1,926,418 + -1.2
1,926,548 + -0.7
1,926,601 - -0.6
1,926,603 + +0.4
1,926,603 + -0.6
1,926,611 - -1.6
1,926,611 - -2.4
1,926,613 + -0.6
1,926,621 - +0.7
1,926,621 - +0.7
1,926,621 - +0.4
1,926,656 + -1.7
1,926,664 - +3.7
1,926,670 - B158DRAFT_1827 0.11 +0.3
1,926,684 + B158DRAFT_1827 0.14 -0.7
1,926,740 + B158DRAFT_1827 0.28 -0.1
1,926,743 - B158DRAFT_1827 0.28 -2.2
1,926,748 - B158DRAFT_1827 0.29 -0.2
1,926,748 - B158DRAFT_1827 0.29 -0.8
1,926,785 + B158DRAFT_1827 0.38 +0.3
1,926,834 - B158DRAFT_1827 0.49 +0.6
1,926,845 + B158DRAFT_1827 0.52 -0.8
1,926,853 - B158DRAFT_1827 0.54 -2.0
1,926,853 - B158DRAFT_1827 0.54 -0.4
1,926,853 - B158DRAFT_1827 0.54 -1.0
1,926,853 - B158DRAFT_1827 0.54 -0.6
1,926,948 - B158DRAFT_1827 0.76 -0.2
1,926,953 - B158DRAFT_1827 0.77 -0.4
1,927,044 - -0.5
1,927,046 + -0.8
1,927,115 + B158DRAFT_1828 0.40 +1.6
1,927,131 + B158DRAFT_1828 0.49 +0.0
1,927,206 - -1.6
1,927,231 + -0.5
1,927,244 + -1.0
1,927,306 - -2.3
1,927,376 + +0.7

Or see this region's nucleotide sequence