Strain Fitness in Agrobacterium fabrum C58 around Atu3790

Experiment: L-Pipecolic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3789 and Atu3790 are separated by 217 nucleotidesAtu3790 and Atu3791 are separated by 552 nucleotides Atu3789: Atu3789 - potassium-transporting ATPase subunit B, at 878,705 to 880,789 Atu3789 Atu3790: Atu3790 - potassium-transporting ATPase subunit A, at 881,007 to 882,710 Atu3790 Atu3791: Atu3791 - L-asparaginase, at 883,263 to 884,216 Atu3791 Position (kb) 881 882 883Strain fitness (log2 ratio) -2 -1 0 1 2at 880.007 kb on - strand, within Atu3789at 880.011 kb on - strand, within Atu3789at 880.105 kb on + strand, within Atu3789at 880.120 kb on + strand, within Atu3789at 880.132 kb on - strand, within Atu3789at 880.159 kb on - strand, within Atu3789at 880.232 kb on + strand, within Atu3789at 880.238 kb on + strand, within Atu3789at 880.322 kb on - strand, within Atu3789at 880.411 kb on + strand, within Atu3789at 880.419 kb on - strand, within Atu3789at 880.671 kb on - strandat 880.698 kb on + strandat 880.701 kb on - strandat 880.701 kb on - strandat 880.804 kb on + strandat 880.942 kb on - strandat 880.956 kb on + strandat 881.005 kb on + strandat 881.005 kb on + strandat 881.013 kb on - strandat 881.013 kb on - strandat 881.034 kb on - strandat 881.037 kb on + strandat 881.039 kb on + strandat 881.076 kb on + strandat 881.099 kb on - strandat 881.146 kb on + strandat 881.209 kb on - strand, within Atu3790at 881.254 kb on + strand, within Atu3790at 881.286 kb on + strand, within Atu3790at 881.380 kb on + strand, within Atu3790at 881.385 kb on + strand, within Atu3790at 881.385 kb on + strand, within Atu3790at 881.393 kb on - strand, within Atu3790at 881.393 kb on - strand, within Atu3790at 881.420 kb on - strand, within Atu3790at 881.547 kb on - strand, within Atu3790at 881.552 kb on - strand, within Atu3790at 881.552 kb on - strand, within Atu3790at 881.601 kb on - strand, within Atu3790at 881.626 kb on - strand, within Atu3790at 881.661 kb on + strand, within Atu3790at 881.745 kb on + strand, within Atu3790at 881.759 kb on + strand, within Atu3790at 881.767 kb on - strand, within Atu3790at 881.767 kb on - strand, within Atu3790at 881.821 kb on + strand, within Atu3790at 881.837 kb on - strand, within Atu3790at 881.837 kb on - strand, within Atu3790at 881.854 kb on + strand, within Atu3790at 881.854 kb on + strand, within Atu3790at 881.930 kb on - strand, within Atu3790at 882.010 kb on + strand, within Atu3790at 882.081 kb on + strand, within Atu3790at 882.109 kb on - strand, within Atu3790at 882.116 kb on - strand, within Atu3790at 882.176 kb on + strand, within Atu3790at 882.176 kb on + strand, within Atu3790at 882.178 kb on - strand, within Atu3790at 882.184 kb on - strand, within Atu3790at 882.269 kb on - strand, within Atu3790at 882.319 kb on + strand, within Atu3790at 882.319 kb on + strand, within Atu3790at 882.332 kb on - strand, within Atu3790at 882.428 kb on + strand, within Atu3790at 882.488 kb on - strand, within Atu3790at 882.510 kb on + strand, within Atu3790at 882.525 kb on + strand, within Atu3790at 882.550 kb on - strandat 882.558 kb on + strandat 882.558 kb on + strandat 882.560 kb on - strandat 882.566 kb on - strandat 882.654 kb on - strandat 882.654 kb on - strandat 882.712 kb on + strandat 882.712 kb on - strandat 882.784 kb on + strandat 882.848 kb on + strandat 882.911 kb on + strandat 882.919 kb on - strandat 882.919 kb on - strandat 882.919 kb on - strandat 882.945 kb on + strandat 882.953 kb on - strandat 882.968 kb on + strandat 882.987 kb on + strandat 883.116 kb on + strandat 883.161 kb on + strandat 883.231 kb on - strandat 883.307 kb on - strandat 883.347 kb on + strandat 883.347 kb on + strandat 883.350 kb on - strandat 883.355 kb on - strandat 883.372 kb on - strand, within Atu3791at 883.434 kb on - strand, within Atu3791at 883.489 kb on - strand, within Atu3791at 883.489 kb on - strand, within Atu3791at 883.517 kb on - strand, within Atu3791at 883.524 kb on - strand, within Atu3791at 883.576 kb on - strand, within Atu3791at 883.627 kb on + strand, within Atu3791at 883.635 kb on - strand, within Atu3791at 883.635 kb on - strand, within Atu3791at 883.677 kb on - strand, within Atu3791

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Pipecolic Acid (N)
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880,007 - Atu3789 0.62 -0.5
880,011 - Atu3789 0.63 +0.8
880,105 + Atu3789 0.67 -0.2
880,120 + Atu3789 0.68 +0.5
880,132 - Atu3789 0.68 +0.8
880,159 - Atu3789 0.70 -1.2
880,232 + Atu3789 0.73 -1.3
880,238 + Atu3789 0.74 -0.0
880,322 - Atu3789 0.78 +1.2
880,411 + Atu3789 0.82 -0.3
880,419 - Atu3789 0.82 +0.9
880,671 - -0.1
880,698 + +0.0
880,701 - -1.9
880,701 - +0.2
880,804 + +0.1
880,942 - -0.2
880,956 + +0.2
881,005 + +0.5
881,005 + -0.2
881,013 - +0.2
881,013 - +0.2
881,034 - -0.0
881,037 + +0.0
881,039 + -0.2
881,076 + +0.3
881,099 - +0.2
881,146 + +0.2
881,209 - Atu3790 0.12 +0.7
881,254 + Atu3790 0.14 -0.2
881,286 + Atu3790 0.16 -0.1
881,380 + Atu3790 0.22 +1.5
881,385 + Atu3790 0.22 -0.0
881,385 + Atu3790 0.22 +0.5
881,393 - Atu3790 0.23 -0.2
881,393 - Atu3790 0.23 -0.1
881,420 - Atu3790 0.24 +0.0
881,547 - Atu3790 0.32 -0.1
881,552 - Atu3790 0.32 +0.4
881,552 - Atu3790 0.32 +0.0
881,601 - Atu3790 0.35 +0.3
881,626 - Atu3790 0.36 +0.1
881,661 + Atu3790 0.38 +0.6
881,745 + Atu3790 0.43 +0.4
881,759 + Atu3790 0.44 +0.0
881,767 - Atu3790 0.45 -0.2
881,767 - Atu3790 0.45 +0.0
881,821 + Atu3790 0.48 +0.1
881,837 - Atu3790 0.49 +0.2
881,837 - Atu3790 0.49 -0.0
881,854 + Atu3790 0.50 +0.6
881,854 + Atu3790 0.50 -0.3
881,930 - Atu3790 0.54 -0.5
882,010 + Atu3790 0.59 -0.0
882,081 + Atu3790 0.63 +0.5
882,109 - Atu3790 0.65 -0.2
882,116 - Atu3790 0.65 +0.5
882,176 + Atu3790 0.69 +0.3
882,176 + Atu3790 0.69 -0.1
882,178 - Atu3790 0.69 -0.1
882,184 - Atu3790 0.69 +0.1
882,269 - Atu3790 0.74 +0.4
882,319 + Atu3790 0.77 +0.0
882,319 + Atu3790 0.77 -0.1
882,332 - Atu3790 0.78 +0.2
882,428 + Atu3790 0.83 -0.5
882,488 - Atu3790 0.87 +0.5
882,510 + Atu3790 0.88 +0.2
882,525 + Atu3790 0.89 +0.3
882,550 - -0.3
882,558 + -0.1
882,558 + -0.5
882,560 - +0.3
882,566 - -0.1
882,654 - -0.3
882,654 - +0.4
882,712 + +0.4
882,712 - +0.2
882,784 + +0.6
882,848 + -0.1
882,911 + -0.5
882,919 - -1.2
882,919 - -0.3
882,919 - -0.0
882,945 + +0.5
882,953 - +0.0
882,968 + +0.1
882,987 + -0.4
883,116 + +0.1
883,161 + +0.7
883,231 - +0.1
883,307 - +2.0
883,347 + +2.2
883,347 + +0.8
883,350 - +0.7
883,355 - +1.2
883,372 - Atu3791 0.11 +0.8
883,434 - Atu3791 0.18 +1.6
883,489 - Atu3791 0.24 +1.9
883,489 - Atu3791 0.24 +1.1
883,517 - Atu3791 0.27 +1.4
883,524 - Atu3791 0.27 +1.6
883,576 - Atu3791 0.33 +1.5
883,627 + Atu3791 0.38 +1.0
883,635 - Atu3791 0.39 +1.0
883,635 - Atu3791 0.39 +1.3
883,677 - Atu3791 0.43 +0.4

Or see this region's nucleotide sequence