Experiment: L-Pipecolic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0870 and Atu0871 are separated by 334 nucleotides Atu0871 and Atu0872 are separated by 169 nucleotides
Atu0870: Atu0870 - trans-aconitate methyltransferase, at 866,012 to 866,782
Atu0870
Atu0871: Atu0871 - branched-chain-amino-acid aminotransferase, at 867,117 to 867,998
Atu0871
Atu0872: Atu0872 - methyl-accepting chemotaxis protein, at 868,168 to 870,525
Atu0872
Position (kb) 867
868 Strain fitness (log2 ratio) -2
-1
0
1
2 at 866.122 kb on - strand, within Atu0870 at 866.216 kb on + strand, within Atu0870 at 866.236 kb on - strand, within Atu0870 at 866.288 kb on + strand, within Atu0870 at 866.338 kb on - strand, within Atu0870 at 866.470 kb on - strand, within Atu0870 at 866.482 kb on + strand, within Atu0870 at 866.498 kb on - strand, within Atu0870 at 866.598 kb on - strand, within Atu0870 at 866.660 kb on - strand, within Atu0870 at 866.669 kb on + strand, within Atu0870 at 866.811 kb on + strand at 866.982 kb on + strand at 866.998 kb on - strand at 867.147 kb on + strand at 867.202 kb on - strand at 867.222 kb on - strand, within Atu0871 at 867.234 kb on + strand, within Atu0871 at 867.309 kb on + strand, within Atu0871 at 867.317 kb on - strand, within Atu0871 at 867.407 kb on + strand, within Atu0871 at 867.432 kb on - strand, within Atu0871 at 867.486 kb on - strand, within Atu0871 at 867.488 kb on + strand, within Atu0871 at 867.548 kb on + strand, within Atu0871 at 867.595 kb on + strand, within Atu0871 at 867.597 kb on + strand, within Atu0871 at 867.657 kb on - strand, within Atu0871 at 867.699 kb on + strand, within Atu0871 at 867.701 kb on - strand, within Atu0871 at 867.825 kb on + strand, within Atu0871 at 868.172 kb on + strand at 868.217 kb on + strand at 868.217 kb on + strand at 868.217 kb on + strand at 868.217 kb on + strand at 868.217 kb on + strand at 868.531 kb on - strand, within Atu0872 at 868.535 kb on + strand, within Atu0872 at 868.543 kb on - strand, within Atu0872 at 868.565 kb on + strand, within Atu0872 at 868.595 kb on - strand, within Atu0872 at 868.610 kb on - strand, within Atu0872 at 868.633 kb on - strand, within Atu0872 at 868.663 kb on + strand, within Atu0872 at 868.699 kb on - strand, within Atu0872 at 868.703 kb on - strand, within Atu0872 at 868.714 kb on - strand, within Atu0872 at 868.768 kb on + strand, within Atu0872 at 868.768 kb on + strand, within Atu0872 at 868.768 kb on + strand, within Atu0872 at 868.824 kb on + strand, within Atu0872 at 868.868 kb on - strand, within Atu0872 at 868.892 kb on - strand, within Atu0872 at 868.897 kb on - strand, within Atu0872 at 868.922 kb on - strand, within Atu0872 at 868.974 kb on + strand, within Atu0872 at 868.994 kb on - strand, within Atu0872
Per-strain Table
Position Strand Gene LocusTag Fraction L-Pipecolic Acid (N) remove 866,122 - Atu0870 0.14 +0.0 866,216 + Atu0870 0.26 +0.2 866,236 - Atu0870 0.29 -1.3 866,288 + Atu0870 0.36 +0.4 866,338 - Atu0870 0.42 +0.6 866,470 - Atu0870 0.59 -0.1 866,482 + Atu0870 0.61 +0.5 866,498 - Atu0870 0.63 -0.3 866,598 - Atu0870 0.76 +0.8 866,660 - Atu0870 0.84 +0.8 866,669 + Atu0870 0.85 -0.3 866,811 + -0.2 866,982 + +0.6 866,998 - +0.1 867,147 + +0.3 867,202 - +0.0 867,222 - Atu0871 0.12 -0.0 867,234 + Atu0871 0.13 +0.4 867,309 + Atu0871 0.22 -0.1 867,317 - Atu0871 0.23 +2.0 867,407 + Atu0871 0.33 -0.1 867,432 - Atu0871 0.36 +0.3 867,486 - Atu0871 0.42 +1.0 867,488 + Atu0871 0.42 +0.4 867,548 + Atu0871 0.49 -0.2 867,595 + Atu0871 0.54 -0.1 867,597 + Atu0871 0.54 -0.5 867,657 - Atu0871 0.61 +0.2 867,699 + Atu0871 0.66 +0.6 867,701 - Atu0871 0.66 -0.4 867,825 + Atu0871 0.80 -0.4 868,172 + +0.3 868,217 + -0.5 868,217 + +0.3 868,217 + +0.0 868,217 + +0.3 868,217 + -0.8 868,531 - Atu0872 0.15 -0.3 868,535 + Atu0872 0.16 +0.5 868,543 - Atu0872 0.16 -0.7 868,565 + Atu0872 0.17 +0.3 868,595 - Atu0872 0.18 -0.0 868,610 - Atu0872 0.19 -0.5 868,633 - Atu0872 0.20 +1.9 868,663 + Atu0872 0.21 +0.0 868,699 - Atu0872 0.23 +0.2 868,703 - Atu0872 0.23 -0.7 868,714 - Atu0872 0.23 +0.4 868,768 + Atu0872 0.25 -0.1 868,768 + Atu0872 0.25 -0.4 868,768 + Atu0872 0.25 +0.3 868,824 + Atu0872 0.28 -0.1 868,868 - Atu0872 0.30 -0.0 868,892 - Atu0872 0.31 +0.2 868,897 - Atu0872 0.31 -2.2 868,922 - Atu0872 0.32 +0.2 868,974 + Atu0872 0.34 +1.1 868,994 - Atu0872 0.35 -0.5
Or see this region's nucleotide sequence