Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4831

Experiment: Gly-Glu (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4830 and PfGW456L13_4831 overlap by 20 nucleotidesPfGW456L13_4831 and PfGW456L13_4832 are separated by 156 nucleotides PfGW456L13_4830 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data), at 5,392,296 to 5,393,402 _4830 PfGW456L13_4831 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data), at 5,393,383 to 5,394,405 _4831 PfGW456L13_4832 - PTS system, glucose-specific IIA component / Phosphotransferase system, phosphocarrier protein HPr / Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 5,394,562 to 5,397,078 _4832 Position (kb) 5393 5394 5395Strain fitness (log2 ratio) -2 -1 0 1 2at 5392.416 kb on + strand, within PfGW456L13_4830at 5392.417 kb on - strand, within PfGW456L13_4830at 5392.529 kb on + strand, within PfGW456L13_4830at 5392.529 kb on + strand, within PfGW456L13_4830at 5392.529 kb on + strand, within PfGW456L13_4830at 5392.529 kb on + strand, within PfGW456L13_4830at 5392.529 kb on + strand, within PfGW456L13_4830at 5392.529 kb on + strand, within PfGW456L13_4830at 5392.530 kb on - strand, within PfGW456L13_4830at 5392.530 kb on - strand, within PfGW456L13_4830at 5392.573 kb on + strand, within PfGW456L13_4830at 5392.574 kb on - strand, within PfGW456L13_4830at 5392.645 kb on + strand, within PfGW456L13_4830at 5392.646 kb on - strand, within PfGW456L13_4830at 5392.646 kb on - strand, within PfGW456L13_4830at 5392.662 kb on + strand, within PfGW456L13_4830at 5392.662 kb on + strand, within PfGW456L13_4830at 5392.662 kb on + strand, within PfGW456L13_4830at 5392.663 kb on - strand, within PfGW456L13_4830at 5392.734 kb on + strand, within PfGW456L13_4830at 5392.735 kb on - strand, within PfGW456L13_4830at 5392.735 kb on - strand, within PfGW456L13_4830at 5392.735 kb on - strand, within PfGW456L13_4830at 5392.794 kb on - strand, within PfGW456L13_4830at 5392.857 kb on + strand, within PfGW456L13_4830at 5392.857 kb on + strand, within PfGW456L13_4830at 5392.857 kb on + strand, within PfGW456L13_4830at 5392.857 kb on + strand, within PfGW456L13_4830at 5392.858 kb on - strand, within PfGW456L13_4830at 5392.858 kb on - strand, within PfGW456L13_4830at 5392.858 kb on - strand, within PfGW456L13_4830at 5392.858 kb on - strand, within PfGW456L13_4830at 5392.858 kb on - strand, within PfGW456L13_4830at 5392.858 kb on - strand, within PfGW456L13_4830at 5392.911 kb on + strand, within PfGW456L13_4830at 5392.911 kb on + strand, within PfGW456L13_4830at 5392.911 kb on + strand, within PfGW456L13_4830at 5392.911 kb on + strand, within PfGW456L13_4830at 5392.911 kb on + strand, within PfGW456L13_4830at 5392.911 kb on + strand, within PfGW456L13_4830at 5392.911 kb on + strand, within PfGW456L13_4830at 5392.912 kb on - strand, within PfGW456L13_4830at 5392.912 kb on - strand, within PfGW456L13_4830at 5392.912 kb on - strand, within PfGW456L13_4830at 5392.912 kb on - strand, within PfGW456L13_4830at 5392.980 kb on + strand, within PfGW456L13_4830at 5392.981 kb on - strand, within PfGW456L13_4830at 5392.981 kb on - strand, within PfGW456L13_4830at 5392.981 kb on - strand, within PfGW456L13_4830at 5393.058 kb on + strand, within PfGW456L13_4830at 5393.058 kb on + strand, within PfGW456L13_4830at 5393.058 kb on + strand, within PfGW456L13_4830at 5393.107 kb on - strand, within PfGW456L13_4830at 5393.275 kb on - strand, within PfGW456L13_4830at 5393.275 kb on - strand, within PfGW456L13_4830at 5393.441 kb on + strandat 5393.441 kb on + strandat 5393.442 kb on - strandat 5393.442 kb on - strandat 5393.442 kb on - strandat 5393.548 kb on + strand, within PfGW456L13_4831at 5393.548 kb on + strand, within PfGW456L13_4831at 5393.549 kb on - strand, within PfGW456L13_4831at 5393.557 kb on + strand, within PfGW456L13_4831at 5393.838 kb on + strand, within PfGW456L13_4831at 5394.133 kb on + strand, within PfGW456L13_4831at 5394.319 kb on + strandat 5394.319 kb on + strandat 5394.319 kb on + strandat 5394.319 kb on + strandat 5394.320 kb on - strandat 5394.396 kb on + strandat 5394.397 kb on - strandat 5394.403 kb on + strandat 5394.403 kb on + strandat 5394.415 kb on + strandat 5394.416 kb on - strandat 5394.416 kb on - strandat 5394.416 kb on - strandat 5394.483 kb on + strandat 5394.509 kb on + strandat 5394.510 kb on - strandat 5394.510 kb on - strandat 5394.510 kb on - strandat 5394.567 kb on + strandat 5394.567 kb on + strandat 5394.568 kb on - strandat 5394.568 kb on - strandat 5394.568 kb on - strandat 5394.568 kb on - strandat 5394.576 kb on + strandat 5394.576 kb on + strandat 5394.577 kb on - strandat 5394.577 kb on - strandat 5394.577 kb on - strandat 5394.591 kb on - strandat 5394.697 kb on - strandat 5395.013 kb on + strand, within PfGW456L13_4832at 5395.013 kb on + strand, within PfGW456L13_4832at 5395.014 kb on - strand, within PfGW456L13_4832at 5395.014 kb on - strand, within PfGW456L13_4832at 5395.014 kb on - strand, within PfGW456L13_4832at 5395.014 kb on - strand, within PfGW456L13_4832at 5395.014 kb on - strand, within PfGW456L13_4832at 5395.394 kb on + strand, within PfGW456L13_4832at 5395.394 kb on + strand, within PfGW456L13_4832at 5395.394 kb on + strand, within PfGW456L13_4832at 5395.394 kb on + strand, within PfGW456L13_4832at 5395.395 kb on - strand, within PfGW456L13_4832at 5395.395 kb on - strand, within PfGW456L13_4832at 5395.395 kb on - strand, within PfGW456L13_4832at 5395.395 kb on - strand, within PfGW456L13_4832at 5395.395 kb on - strand, within PfGW456L13_4832

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
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5,392,416 + PfGW456L13_4830 0.11 -0.4
5,392,417 - PfGW456L13_4830 0.11 -1.4
5,392,529 + PfGW456L13_4830 0.21 -1.5
5,392,529 + PfGW456L13_4830 0.21 -0.6
5,392,529 + PfGW456L13_4830 0.21 -1.2
5,392,529 + PfGW456L13_4830 0.21 -0.5
5,392,529 + PfGW456L13_4830 0.21 -1.7
5,392,529 + PfGW456L13_4830 0.21 +0.4
5,392,530 - PfGW456L13_4830 0.21 -0.4
5,392,530 - PfGW456L13_4830 0.21 +0.6
5,392,573 + PfGW456L13_4830 0.25 +0.1
5,392,574 - PfGW456L13_4830 0.25 +0.1
5,392,645 + PfGW456L13_4830 0.32 +0.0
5,392,646 - PfGW456L13_4830 0.32 +0.0
5,392,646 - PfGW456L13_4830 0.32 +0.7
5,392,662 + PfGW456L13_4830 0.33 +0.8
5,392,662 + PfGW456L13_4830 0.33 -0.9
5,392,662 + PfGW456L13_4830 0.33 +1.0
5,392,663 - PfGW456L13_4830 0.33 -1.7
5,392,734 + PfGW456L13_4830 0.40 +0.8
5,392,735 - PfGW456L13_4830 0.40 -2.1
5,392,735 - PfGW456L13_4830 0.40 +0.8
5,392,735 - PfGW456L13_4830 0.40 +0.0
5,392,794 - PfGW456L13_4830 0.45 +0.6
5,392,857 + PfGW456L13_4830 0.51 -0.2
5,392,857 + PfGW456L13_4830 0.51 -0.5
5,392,857 + PfGW456L13_4830 0.51 +1.1
5,392,857 + PfGW456L13_4830 0.51 -0.1
5,392,858 - PfGW456L13_4830 0.51 +0.9
5,392,858 - PfGW456L13_4830 0.51 -0.9
5,392,858 - PfGW456L13_4830 0.51 -0.1
5,392,858 - PfGW456L13_4830 0.51 -0.3
5,392,858 - PfGW456L13_4830 0.51 -0.8
5,392,858 - PfGW456L13_4830 0.51 -0.5
5,392,911 + PfGW456L13_4830 0.56 +0.4
5,392,911 + PfGW456L13_4830 0.56 +1.1
5,392,911 + PfGW456L13_4830 0.56 -0.9
5,392,911 + PfGW456L13_4830 0.56 +1.2
5,392,911 + PfGW456L13_4830 0.56 -0.7
5,392,911 + PfGW456L13_4830 0.56 -0.8
5,392,911 + PfGW456L13_4830 0.56 -0.4
5,392,912 - PfGW456L13_4830 0.56 -0.5
5,392,912 - PfGW456L13_4830 0.56 +0.8
5,392,912 - PfGW456L13_4830 0.56 -2.1
5,392,912 - PfGW456L13_4830 0.56 -1.0
5,392,980 + PfGW456L13_4830 0.62 -0.6
5,392,981 - PfGW456L13_4830 0.62 -0.7
5,392,981 - PfGW456L13_4830 0.62 +0.2
5,392,981 - PfGW456L13_4830 0.62 +0.1
5,393,058 + PfGW456L13_4830 0.69 +0.3
5,393,058 + PfGW456L13_4830 0.69 -0.0
5,393,058 + PfGW456L13_4830 0.69 -0.5
5,393,107 - PfGW456L13_4830 0.73 +0.8
5,393,275 - PfGW456L13_4830 0.88 -1.4
5,393,275 - PfGW456L13_4830 0.88 +0.3
5,393,441 + +0.7
5,393,441 + +0.1
5,393,442 - -1.2
5,393,442 - -0.6
5,393,442 - -0.9
5,393,548 + PfGW456L13_4831 0.16 -0.3
5,393,548 + PfGW456L13_4831 0.16 -0.8
5,393,549 - PfGW456L13_4831 0.16 -1.4
5,393,557 + PfGW456L13_4831 0.17 +0.4
5,393,838 + PfGW456L13_4831 0.44 -1.1
5,394,133 + PfGW456L13_4831 0.73 -0.5
5,394,319 + -0.1
5,394,319 + -0.7
5,394,319 + +1.1
5,394,319 + +0.4
5,394,320 - -0.7
5,394,396 + -0.1
5,394,397 - -1.1
5,394,403 + -0.0
5,394,403 + -0.2
5,394,415 + +0.5
5,394,416 - -0.0
5,394,416 - +0.3
5,394,416 - +1.0
5,394,483 + +1.0
5,394,509 + -0.4
5,394,510 - +0.3
5,394,510 - -0.0
5,394,510 - +0.7
5,394,567 + +0.9
5,394,567 + -2.0
5,394,568 - +0.8
5,394,568 - +0.6
5,394,568 - +0.5
5,394,568 - -0.2
5,394,576 + -0.4
5,394,576 + -0.9
5,394,577 - -0.3
5,394,577 - +0.3
5,394,577 - +0.6
5,394,591 - +1.4
5,394,697 - -0.1
5,395,013 + PfGW456L13_4832 0.18 +0.0
5,395,013 + PfGW456L13_4832 0.18 +0.0
5,395,014 - PfGW456L13_4832 0.18 +2.1
5,395,014 - PfGW456L13_4832 0.18 -1.0
5,395,014 - PfGW456L13_4832 0.18 +0.6
5,395,014 - PfGW456L13_4832 0.18 -1.5
5,395,014 - PfGW456L13_4832 0.18 +1.3
5,395,394 + PfGW456L13_4832 0.33 +0.6
5,395,394 + PfGW456L13_4832 0.33 -0.2
5,395,394 + PfGW456L13_4832 0.33 -1.2
5,395,394 + PfGW456L13_4832 0.33 -1.8
5,395,395 - PfGW456L13_4832 0.33 -0.7
5,395,395 - PfGW456L13_4832 0.33 -0.1
5,395,395 - PfGW456L13_4832 0.33 +0.4
5,395,395 - PfGW456L13_4832 0.33 +1.2
5,395,395 - PfGW456L13_4832 0.33 -0.6

Or see this region's nucleotide sequence