Experiment: Gly-Glu (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1313 and PfGW456L13_1314 are separated by 47 nucleotides PfGW456L13_1314 and PfGW456L13_1315 are separated by 16 nucleotides PfGW456L13_1315 and PfGW456L13_1316 are separated by 91 nucleotides PfGW456L13_1316 and PfGW456L13_1317 overlap by 4 nucleotides
PfGW456L13_1313 - Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193), at 1,453,360 to 1,454,493
_1313
PfGW456L13_1314 - Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9), at 1,454,541 to 1,455,206
_1314
PfGW456L13_1315 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25), at 1,455,223 to 1,456,314
_1315
PfGW456L13_1316 - 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78), at 1,456,406 to 1,456,882
_1316
PfGW456L13_1317 - Transcription termination protein NusB, at 1,456,879 to 1,457,379
_1317
Position (kb)
1455
1456
1457 Strain fitness (log2 ratio)
-2
-1
0
1 at 1454.490 kb on - strand at 1454.491 kb on + strand at 1454.508 kb on + strand at 1454.508 kb on + strand at 1454.508 kb on + strand at 1455.234 kb on + strand at 1455.235 kb on - strand at 1455.235 kb on - strand at 1455.235 kb on - strand at 1455.814 kb on + strand, within PfGW456L13_1315 at 1455.834 kb on + strand, within PfGW456L13_1315 at 1455.834 kb on + strand, within PfGW456L13_1315 at 1455.834 kb on + strand, within PfGW456L13_1315 at 1455.834 kb on + strand, within PfGW456L13_1315 at 1455.835 kb on - strand, within PfGW456L13_1315 at 1455.835 kb on - strand, within PfGW456L13_1315 at 1455.835 kb on - strand, within PfGW456L13_1315 at 1455.898 kb on + strand, within PfGW456L13_1315 at 1455.898 kb on + strand, within PfGW456L13_1315 at 1455.898 kb on + strand, within PfGW456L13_1315 at 1455.899 kb on - strand, within PfGW456L13_1315 at 1455.899 kb on - strand, within PfGW456L13_1315 at 1455.899 kb on - strand, within PfGW456L13_1315 at 1456.131 kb on + strand, within PfGW456L13_1315 at 1456.177 kb on + strand, within PfGW456L13_1315 at 1456.177 kb on + strand, within PfGW456L13_1315 at 1456.177 kb on + strand, within PfGW456L13_1315 at 1456.177 kb on + strand, within PfGW456L13_1315 at 1456.177 kb on + strand, within PfGW456L13_1315 at 1456.177 kb on + strand, within PfGW456L13_1315 at 1456.292 kb on + strand at 1456.292 kb on + strand at 1456.292 kb on + strand at 1456.297 kb on + strand at 1456.297 kb on + strand at 1456.297 kb on + strand at 1456.297 kb on + strand at 1456.297 kb on + strand at 1456.297 kb on + strand at 1456.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (N) remove 1,454,490 - +1.3 1,454,491 + -0.3 1,454,508 + +0.4 1,454,508 + +0.7 1,454,508 + +0.2 1,455,234 + -0.2 1,455,235 - +0.2 1,455,235 - +0.2 1,455,235 - -0.3 1,455,814 + PfGW456L13_1315 0.54 +0.5 1,455,834 + PfGW456L13_1315 0.56 +0.0 1,455,834 + PfGW456L13_1315 0.56 +0.8 1,455,834 + PfGW456L13_1315 0.56 +0.5 1,455,834 + PfGW456L13_1315 0.56 +0.2 1,455,835 - PfGW456L13_1315 0.56 -0.5 1,455,835 - PfGW456L13_1315 0.56 -0.4 1,455,835 - PfGW456L13_1315 0.56 -1.1 1,455,898 + PfGW456L13_1315 0.62 -0.7 1,455,898 + PfGW456L13_1315 0.62 -1.7 1,455,898 + PfGW456L13_1315 0.62 -2.1 1,455,899 - PfGW456L13_1315 0.62 -0.3 1,455,899 - PfGW456L13_1315 0.62 -1.6 1,455,899 - PfGW456L13_1315 0.62 -0.8 1,456,131 + PfGW456L13_1315 0.83 +1.5 1,456,177 + PfGW456L13_1315 0.87 +1.0 1,456,177 + PfGW456L13_1315 0.87 -2.0 1,456,177 + PfGW456L13_1315 0.87 +0.5 1,456,177 + PfGW456L13_1315 0.87 +1.5 1,456,177 + PfGW456L13_1315 0.87 +0.3 1,456,177 + PfGW456L13_1315 0.87 +1.5 1,456,292 + +1.4 1,456,292 + +1.0 1,456,292 + -1.7 1,456,297 + +0.6 1,456,297 + -0.3 1,456,297 + -0.9 1,456,297 + +1.0 1,456,297 + -1.5 1,456,297 + +0.2 1,456,369 + -0.0
Or see this region's nucleotide sequence