Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1315

Experiment: Gly-Glu (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1313 and PfGW456L13_1314 are separated by 47 nucleotidesPfGW456L13_1314 and PfGW456L13_1315 are separated by 16 nucleotidesPfGW456L13_1315 and PfGW456L13_1316 are separated by 91 nucleotidesPfGW456L13_1316 and PfGW456L13_1317 overlap by 4 nucleotides PfGW456L13_1313 - Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193), at 1,453,360 to 1,454,493 _1313 PfGW456L13_1314 - Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9), at 1,454,541 to 1,455,206 _1314 PfGW456L13_1315 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25), at 1,455,223 to 1,456,314 _1315 PfGW456L13_1316 - 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78), at 1,456,406 to 1,456,882 _1316 PfGW456L13_1317 - Transcription termination protein NusB, at 1,456,879 to 1,457,379 _1317 Position (kb) 1455 1456 1457Strain fitness (log2 ratio) -2 -1 0 1at 1454.490 kb on - strandat 1454.491 kb on + strandat 1454.508 kb on + strandat 1454.508 kb on + strandat 1454.508 kb on + strandat 1455.234 kb on + strandat 1455.235 kb on - strandat 1455.235 kb on - strandat 1455.235 kb on - strandat 1455.814 kb on + strand, within PfGW456L13_1315at 1455.834 kb on + strand, within PfGW456L13_1315at 1455.834 kb on + strand, within PfGW456L13_1315at 1455.834 kb on + strand, within PfGW456L13_1315at 1455.834 kb on + strand, within PfGW456L13_1315at 1455.835 kb on - strand, within PfGW456L13_1315at 1455.835 kb on - strand, within PfGW456L13_1315at 1455.835 kb on - strand, within PfGW456L13_1315at 1455.898 kb on + strand, within PfGW456L13_1315at 1455.898 kb on + strand, within PfGW456L13_1315at 1455.898 kb on + strand, within PfGW456L13_1315at 1455.899 kb on - strand, within PfGW456L13_1315at 1455.899 kb on - strand, within PfGW456L13_1315at 1455.899 kb on - strand, within PfGW456L13_1315at 1456.131 kb on + strand, within PfGW456L13_1315at 1456.177 kb on + strand, within PfGW456L13_1315at 1456.177 kb on + strand, within PfGW456L13_1315at 1456.177 kb on + strand, within PfGW456L13_1315at 1456.177 kb on + strand, within PfGW456L13_1315at 1456.177 kb on + strand, within PfGW456L13_1315at 1456.177 kb on + strand, within PfGW456L13_1315at 1456.292 kb on + strandat 1456.292 kb on + strandat 1456.292 kb on + strandat 1456.297 kb on + strandat 1456.297 kb on + strandat 1456.297 kb on + strandat 1456.297 kb on + strandat 1456.297 kb on + strandat 1456.297 kb on + strandat 1456.369 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
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1,454,490 - +1.3
1,454,491 + -0.3
1,454,508 + +0.4
1,454,508 + +0.7
1,454,508 + +0.2
1,455,234 + -0.2
1,455,235 - +0.2
1,455,235 - +0.2
1,455,235 - -0.3
1,455,814 + PfGW456L13_1315 0.54 +0.5
1,455,834 + PfGW456L13_1315 0.56 +0.0
1,455,834 + PfGW456L13_1315 0.56 +0.8
1,455,834 + PfGW456L13_1315 0.56 +0.5
1,455,834 + PfGW456L13_1315 0.56 +0.2
1,455,835 - PfGW456L13_1315 0.56 -0.5
1,455,835 - PfGW456L13_1315 0.56 -0.4
1,455,835 - PfGW456L13_1315 0.56 -1.1
1,455,898 + PfGW456L13_1315 0.62 -0.7
1,455,898 + PfGW456L13_1315 0.62 -1.7
1,455,898 + PfGW456L13_1315 0.62 -2.1
1,455,899 - PfGW456L13_1315 0.62 -0.3
1,455,899 - PfGW456L13_1315 0.62 -1.6
1,455,899 - PfGW456L13_1315 0.62 -0.8
1,456,131 + PfGW456L13_1315 0.83 +1.5
1,456,177 + PfGW456L13_1315 0.87 +1.0
1,456,177 + PfGW456L13_1315 0.87 -2.0
1,456,177 + PfGW456L13_1315 0.87 +0.5
1,456,177 + PfGW456L13_1315 0.87 +1.5
1,456,177 + PfGW456L13_1315 0.87 +0.3
1,456,177 + PfGW456L13_1315 0.87 +1.5
1,456,292 + +1.4
1,456,292 + +1.0
1,456,292 + -1.7
1,456,297 + +0.6
1,456,297 + -0.3
1,456,297 + -0.9
1,456,297 + +1.0
1,456,297 + -1.5
1,456,297 + +0.2
1,456,369 + -0.0

Or see this region's nucleotide sequence