Experiment: L-Pipecolic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5201 and Atu5202 are separated by 261 nucleotides Atu5202 and Atu5203 are separated by 48 nucleotides
Atu5201: Atu5201 - pirin, at 198,330 to 199,184
Atu5201
Atu5202: Atu5202 - alcohol dehydrogenase, at 199,446 to 200,564
Atu5202
Atu5203: Atu5203 - beta-lactamase, at 200,613 to 201,692
Atu5203
Position (kb) 199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 198.486 kb on + strand, within Atu5201 at 198.500 kb on + strand, within Atu5201 at 198.507 kb on - strand, within Atu5201 at 198.514 kb on - strand, within Atu5201 at 198.518 kb on + strand, within Atu5201 at 198.526 kb on + strand, within Atu5201 at 198.534 kb on - strand, within Atu5201 at 198.534 kb on - strand, within Atu5201 at 198.534 kb on - strand, within Atu5201 at 198.570 kb on + strand, within Atu5201 at 198.583 kb on - strand, within Atu5201 at 198.648 kb on + strand, within Atu5201 at 198.667 kb on - strand, within Atu5201 at 198.680 kb on + strand, within Atu5201 at 198.684 kb on + strand, within Atu5201 at 198.702 kb on + strand, within Atu5201 at 198.746 kb on - strand, within Atu5201 at 198.873 kb on + strand, within Atu5201 at 198.881 kb on - strand, within Atu5201 at 198.928 kb on - strand, within Atu5201 at 198.944 kb on + strand, within Atu5201 at 198.966 kb on + strand, within Atu5201 at 199.000 kb on + strand, within Atu5201 at 199.000 kb on - strand, within Atu5201 at 199.022 kb on + strand, within Atu5201 at 199.030 kb on - strand, within Atu5201 at 199.168 kb on - strand at 199.190 kb on + strand at 199.228 kb on + strand at 199.254 kb on + strand at 199.262 kb on - strand at 199.262 kb on - strand at 199.262 kb on - strand at 199.262 kb on - strand at 199.262 kb on - strand at 199.280 kb on - strand at 199.299 kb on - strand at 199.356 kb on + strand at 199.369 kb on - strand at 199.369 kb on - strand at 199.402 kb on + strand at 199.475 kb on - strand at 199.500 kb on - strand at 199.513 kb on + strand at 199.599 kb on - strand, within Atu5202 at 199.715 kb on + strand, within Atu5202 at 199.717 kb on + strand, within Atu5202 at 199.816 kb on + strand, within Atu5202 at 199.816 kb on + strand, within Atu5202 at 199.816 kb on + strand, within Atu5202 at 199.824 kb on - strand, within Atu5202 at 199.824 kb on - strand, within Atu5202 at 199.855 kb on + strand, within Atu5202 at 199.855 kb on + strand, within Atu5202 at 199.855 kb on + strand, within Atu5202 at 199.855 kb on + strand, within Atu5202 at 199.873 kb on - strand, within Atu5202 at 199.893 kb on + strand, within Atu5202 at 199.901 kb on - strand, within Atu5202 at 199.901 kb on - strand, within Atu5202 at 199.914 kb on - strand, within Atu5202 at 199.940 kb on + strand, within Atu5202 at 199.954 kb on + strand, within Atu5202 at 199.991 kb on - strand, within Atu5202 at 199.991 kb on - strand, within Atu5202 at 200.001 kb on - strand, within Atu5202 at 200.120 kb on + strand, within Atu5202 at 200.128 kb on - strand, within Atu5202 at 200.128 kb on - strand, within Atu5202 at 200.131 kb on + strand, within Atu5202 at 200.153 kb on - strand, within Atu5202 at 200.159 kb on - strand, within Atu5202 at 200.163 kb on - strand, within Atu5202 at 200.163 kb on - strand, within Atu5202 at 200.257 kb on - strand, within Atu5202 at 200.275 kb on + strand, within Atu5202 at 200.275 kb on + strand, within Atu5202 at 200.283 kb on - strand, within Atu5202 at 200.348 kb on + strand, within Atu5202 at 200.353 kb on + strand, within Atu5202 at 200.367 kb on - strand, within Atu5202 at 200.382 kb on - strand, within Atu5202 at 200.440 kb on + strand, within Atu5202 at 200.525 kb on + strand at 200.525 kb on + strand at 200.525 kb on + strand at 200.557 kb on + strand at 200.602 kb on + strand at 200.602 kb on + strand at 200.636 kb on + strand at 200.691 kb on - strand at 200.705 kb on + strand at 200.720 kb on - strand at 200.801 kb on - strand, within Atu5203 at 200.829 kb on + strand, within Atu5203 at 200.871 kb on + strand, within Atu5203 at 200.926 kb on - strand, within Atu5203 at 200.966 kb on + strand, within Atu5203 at 201.053 kb on + strand, within Atu5203 at 201.053 kb on + strand, within Atu5203 at 201.115 kb on + strand, within Atu5203 at 201.123 kb on - strand, within Atu5203 at 201.398 kb on + strand, within Atu5203 at 201.429 kb on - strand, within Atu5203 at 201.442 kb on - strand, within Atu5203 at 201.488 kb on - strand, within Atu5203 at 201.549 kb on + strand, within Atu5203 at 201.549 kb on + strand, within Atu5203 at 201.554 kb on + strand, within Atu5203 at 201.554 kb on + strand, within Atu5203 at 201.554 kb on + strand, within Atu5203 at 201.554 kb on + strand, within Atu5203 at 201.559 kb on + strand, within Atu5203 at 201.562 kb on - strand, within Atu5203
Per-strain Table
Position Strand Gene LocusTag Fraction L-Pipecolic Acid (N) remove 198,486 + Atu5201 0.18 +0.2 198,500 + Atu5201 0.20 +1.5 198,507 - Atu5201 0.21 +0.2 198,514 - Atu5201 0.22 +0.6 198,518 + Atu5201 0.22 -0.7 198,526 + Atu5201 0.23 +0.6 198,534 - Atu5201 0.24 -0.7 198,534 - Atu5201 0.24 -0.5 198,534 - Atu5201 0.24 +0.4 198,570 + Atu5201 0.28 -0.5 198,583 - Atu5201 0.30 -0.4 198,648 + Atu5201 0.37 +0.0 198,667 - Atu5201 0.39 -0.9 198,680 + Atu5201 0.41 -0.2 198,684 + Atu5201 0.41 -0.4 198,702 + Atu5201 0.44 -0.7 198,746 - Atu5201 0.49 +1.2 198,873 + Atu5201 0.64 -0.0 198,881 - Atu5201 0.64 +1.1 198,928 - Atu5201 0.70 +0.9 198,944 + Atu5201 0.72 +0.6 198,966 + Atu5201 0.74 +1.1 199,000 + Atu5201 0.78 -2.0 199,000 - Atu5201 0.78 +0.5 199,022 + Atu5201 0.81 +0.5 199,030 - Atu5201 0.82 -1.2 199,168 - +0.2 199,190 + -0.3 199,228 + +0.4 199,254 + +0.0 199,262 - +1.2 199,262 - +0.6 199,262 - +0.7 199,262 - +0.0 199,262 - -0.1 199,280 - -2.8 199,299 - -1.0 199,356 + -0.7 199,369 - +0.0 199,369 - -0.5 199,402 + -0.9 199,475 - +0.3 199,500 - +0.2 199,513 + -0.1 199,599 - Atu5202 0.14 +1.2 199,715 + Atu5202 0.24 -1.8 199,717 + Atu5202 0.24 -0.2 199,816 + Atu5202 0.33 +1.0 199,816 + Atu5202 0.33 -0.6 199,816 + Atu5202 0.33 +1.5 199,824 - Atu5202 0.34 -0.5 199,824 - Atu5202 0.34 +0.5 199,855 + Atu5202 0.37 -0.6 199,855 + Atu5202 0.37 +1.0 199,855 + Atu5202 0.37 +0.4 199,855 + Atu5202 0.37 +0.6 199,873 - Atu5202 0.38 +0.4 199,893 + Atu5202 0.40 +0.2 199,901 - Atu5202 0.41 +2.8 199,901 - Atu5202 0.41 -0.4 199,914 - Atu5202 0.42 +0.9 199,940 + Atu5202 0.44 +1.8 199,954 + Atu5202 0.45 +0.2 199,991 - Atu5202 0.49 +0.3 199,991 - Atu5202 0.49 +1.0 200,001 - Atu5202 0.50 +0.3 200,120 + Atu5202 0.60 -1.3 200,128 - Atu5202 0.61 +1.0 200,128 - Atu5202 0.61 +0.5 200,131 + Atu5202 0.61 +0.1 200,153 - Atu5202 0.63 -1.5 200,159 - Atu5202 0.64 -0.6 200,163 - Atu5202 0.64 +0.6 200,163 - Atu5202 0.64 -0.5 200,257 - Atu5202 0.72 +1.1 200,275 + Atu5202 0.74 +0.4 200,275 + Atu5202 0.74 -1.3 200,283 - Atu5202 0.75 -0.1 200,348 + Atu5202 0.81 -1.2 200,353 + Atu5202 0.81 +0.3 200,367 - Atu5202 0.82 +0.8 200,382 - Atu5202 0.84 -0.5 200,440 + Atu5202 0.89 +0.0 200,525 + +0.1 200,525 + +0.2 200,525 + -0.3 200,557 + +0.3 200,602 + -0.4 200,602 + +0.6 200,636 + +1.3 200,691 - -0.7 200,705 + +1.9 200,720 - -0.1 200,801 - Atu5203 0.17 +1.9 200,829 + Atu5203 0.20 -0.8 200,871 + Atu5203 0.24 +0.2 200,926 - Atu5203 0.29 -0.1 200,966 + Atu5203 0.33 +0.3 201,053 + Atu5203 0.41 -0.3 201,053 + Atu5203 0.41 -0.8 201,115 + Atu5203 0.46 -0.0 201,123 - Atu5203 0.47 +0.4 201,398 + Atu5203 0.73 +0.1 201,429 - Atu5203 0.76 -1.0 201,442 - Atu5203 0.77 -0.0 201,488 - Atu5203 0.81 -0.8 201,549 + Atu5203 0.87 -0.1 201,549 + Atu5203 0.87 +0.9 201,554 + Atu5203 0.87 -0.2 201,554 + Atu5203 0.87 -0.5 201,554 + Atu5203 0.87 +1.0 201,554 + Atu5203 0.87 -0.0 201,559 + Atu5203 0.88 +2.0 201,562 - Atu5203 0.88 -0.1
Or see this region's nucleotide sequence