Experiment: L-Pipecolic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0633 and Atu0634 are separated by 191 nucleotides Atu0634 and Atu0635 are separated by 44 nucleotides Atu0635 and Atu0636 are separated by 96 nucleotides
Atu0633: Atu0633 - hypothetical protein, at 620,729 to 622,573
Atu0633
Atu0634: Atu0634 - octaprenyl-diphosphate synthase, at 622,765 to 623,781
Atu0634
Atu0635: Atu0635 - hypothetical protein, at 623,826 to 624,122
Atu0635
Atu0636: Atu0636 - hypothetical protein, at 624,219 to 624,929
Atu0636
Position (kb) 622
623
624 Strain fitness (log2 ratio) -1
0
1 at 622.595 kb on - strand at 622.706 kb on - strand at 622.725 kb on + strand at 623.966 kb on + strand, within Atu0635 at 623.980 kb on - strand, within Atu0635 at 623.995 kb on + strand, within Atu0635 at 624.024 kb on - strand, within Atu0635 at 624.116 kb on + strand at 624.178 kb on - strand at 624.197 kb on + strand at 624.197 kb on + strand at 624.205 kb on - strand at 624.224 kb on - strand at 624.231 kb on + strand at 624.333 kb on + strand, within Atu0636 at 624.340 kb on - strand, within Atu0636 at 624.532 kb on - strand, within Atu0636 at 624.534 kb on - strand, within Atu0636 at 624.580 kb on - strand, within Atu0636 at 624.608 kb on + strand, within Atu0636 at 624.608 kb on + strand, within Atu0636 at 624.673 kb on + strand, within Atu0636 at 624.734 kb on - strand, within Atu0636
Per-strain Table
Position Strand Gene LocusTag Fraction L-Pipecolic Acid (N) remove 622,595 - -0.2 622,706 - -0.8 622,725 + +0.1 623,966 + Atu0635 0.47 -0.0 623,980 - Atu0635 0.52 +0.3 623,995 + Atu0635 0.57 -0.0 624,024 - Atu0635 0.67 +0.6 624,116 + +0.4 624,178 - +0.4 624,197 + +0.0 624,197 + -0.7 624,205 - -0.1 624,224 - -0.5 624,231 + -0.4 624,333 + Atu0636 0.16 +1.7 624,340 - Atu0636 0.17 -0.5 624,532 - Atu0636 0.44 -0.5 624,534 - Atu0636 0.44 +0.7 624,580 - Atu0636 0.51 +1.1 624,608 + Atu0636 0.55 +0.8 624,608 + Atu0636 0.55 -0.5 624,673 + Atu0636 0.64 -0.5 624,734 - Atu0636 0.72 -0.2
Or see this region's nucleotide sequence