Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_880

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_879 and PfGW456L13_880 are separated by 255 nucleotidesPfGW456L13_880 and PfGW456L13_881 are separated by 120 nucleotidesPfGW456L13_881 and PfGW456L13_882 are separated by 247 nucleotides PfGW456L13_879 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 986,877 to 987,662 _879 PfGW456L13_880 - Transcriptional regulator, GntR family, at 987,918 to 988,625 _880 PfGW456L13_881 - Thioredoxin, at 988,746 to 989,075 _881 PfGW456L13_882 - Transcription termination factor Rho, at 989,323 to 990,582 _882 Position (kb) 987 988 989Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 987.010 kb on + strand, within PfGW456L13_879at 987.010 kb on + strand, within PfGW456L13_879at 987.011 kb on - strand, within PfGW456L13_879at 987.011 kb on - strand, within PfGW456L13_879at 987.011 kb on - strand, within PfGW456L13_879at 987.011 kb on - strand, within PfGW456L13_879at 987.127 kb on + strand, within PfGW456L13_879at 987.127 kb on + strand, within PfGW456L13_879at 987.298 kb on + strand, within PfGW456L13_879at 987.298 kb on + strand, within PfGW456L13_879at 987.298 kb on + strand, within PfGW456L13_879at 987.299 kb on - strand, within PfGW456L13_879at 987.299 kb on - strand, within PfGW456L13_879at 987.299 kb on - strand, within PfGW456L13_879at 987.299 kb on - strand, within PfGW456L13_879at 987.378 kb on + strand, within PfGW456L13_879at 987.378 kb on + strand, within PfGW456L13_879at 987.378 kb on + strand, within PfGW456L13_879at 987.378 kb on + strand, within PfGW456L13_879at 987.378 kb on + strand, within PfGW456L13_879at 987.379 kb on - strand, within PfGW456L13_879at 987.379 kb on - strand, within PfGW456L13_879at 987.379 kb on - strand, within PfGW456L13_879at 987.379 kb on - strand, within PfGW456L13_879at 987.379 kb on - strand, within PfGW456L13_879at 987.758 kb on - strandat 987.777 kb on - strandat 987.777 kb on - strandat 987.873 kb on + strandat 987.873 kb on + strandat 987.879 kb on + strandat 987.879 kb on + strandat 987.879 kb on + strandat 987.879 kb on + strandat 987.879 kb on + strandat 987.879 kb on + strandat 987.879 kb on + strandat 987.880 kb on - strandat 987.880 kb on - strandat 987.880 kb on - strandat 987.880 kb on - strandat 987.880 kb on - strandat 987.880 kb on - strandat 987.940 kb on + strandat 987.941 kb on - strandat 988.103 kb on + strand, within PfGW456L13_880at 988.104 kb on - strand, within PfGW456L13_880at 988.104 kb on - strand, within PfGW456L13_880at 988.104 kb on - strand, within PfGW456L13_880at 988.123 kb on + strand, within PfGW456L13_880at 988.124 kb on - strand, within PfGW456L13_880at 988.124 kb on - strand, within PfGW456L13_880at 988.148 kb on - strand, within PfGW456L13_880at 988.148 kb on - strand, within PfGW456L13_880at 988.222 kb on - strand, within PfGW456L13_880at 988.570 kb on + strandat 988.570 kb on + strandat 988.570 kb on + strandat 988.570 kb on + strandat 988.570 kb on + strandat 988.570 kb on + strandat 988.570 kb on + strandat 988.570 kb on + strandat 988.570 kb on + strandat 988.570 kb on + strandat 988.570 kb on + strandat 988.570 kb on + strandat 988.570 kb on + strandat 988.570 kb on + strandat 988.571 kb on - strandat 988.571 kb on - strandat 988.571 kb on - strandat 988.571 kb on - strandat 988.571 kb on - strandat 988.571 kb on - strandat 988.571 kb on - strandat 988.571 kb on - strandat 988.571 kb on - strandat 988.571 kb on - strandat 988.571 kb on - strandat 988.571 kb on - strandat 988.571 kb on - strandat 988.571 kb on - strandat 988.571 kb on - strandat 988.571 kb on - strandat 988.575 kb on - strandat 988.633 kb on + strandat 988.633 kb on + strandat 988.633 kb on + strandat 988.633 kb on + strandat 988.633 kb on + strandat 988.633 kb on + strandat 988.633 kb on + strandat 988.633 kb on + strandat 988.633 kb on + strandat 988.633 kb on + strandat 988.633 kb on + strandat 988.634 kb on - strandat 988.634 kb on - strandat 988.634 kb on - strandat 988.634 kb on - strandat 988.634 kb on - strandat 988.634 kb on - strandat 988.634 kb on - strandat 988.634 kb on - strandat 988.728 kb on + strandat 988.728 kb on + strandat 989.073 kb on + strandat 989.073 kb on + strandat 989.073 kb on + strandat 989.073 kb on + strandat 989.073 kb on + strandat 989.073 kb on + strandat 989.073 kb on + strandat 989.073 kb on + strandat 989.074 kb on - strandat 989.074 kb on - strandat 989.074 kb on - strandat 989.149 kb on + strandat 989.162 kb on + strandat 989.162 kb on + strandat 989.162 kb on + strandat 989.162 kb on + strandat 989.162 kb on + strandat 989.162 kb on + strandat 989.162 kb on + strandat 989.230 kb on + strandat 989.230 kb on + strandat 989.234 kb on + strandat 989.272 kb on + strandat 989.285 kb on + strandat 989.301 kb on + strandat 989.301 kb on + strandat 989.301 kb on + strandat 989.309 kb on + strandat 989.309 kb on + strandat 989.320 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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987,010 + PfGW456L13_879 0.17 -0.5
987,010 + PfGW456L13_879 0.17 +0.9
987,011 - PfGW456L13_879 0.17 +0.8
987,011 - PfGW456L13_879 0.17 +1.2
987,011 - PfGW456L13_879 0.17 +0.3
987,011 - PfGW456L13_879 0.17 +0.9
987,127 + PfGW456L13_879 0.32 -0.2
987,127 + PfGW456L13_879 0.32 +0.7
987,298 + PfGW456L13_879 0.54 +1.1
987,298 + PfGW456L13_879 0.54 +0.5
987,298 + PfGW456L13_879 0.54 -0.2
987,299 - PfGW456L13_879 0.54 +0.5
987,299 - PfGW456L13_879 0.54 +0.1
987,299 - PfGW456L13_879 0.54 +0.6
987,299 - PfGW456L13_879 0.54 -0.3
987,378 + PfGW456L13_879 0.64 -1.2
987,378 + PfGW456L13_879 0.64 +0.8
987,378 + PfGW456L13_879 0.64 +2.2
987,378 + PfGW456L13_879 0.64 -1.0
987,378 + PfGW456L13_879 0.64 +0.6
987,379 - PfGW456L13_879 0.64 +0.5
987,379 - PfGW456L13_879 0.64 +0.6
987,379 - PfGW456L13_879 0.64 -1.4
987,379 - PfGW456L13_879 0.64 +0.5
987,379 - PfGW456L13_879 0.64 -1.9
987,758 - +0.4
987,777 - -1.4
987,777 - +0.0
987,873 + +0.6
987,873 + +0.6
987,879 + -0.8
987,879 + +1.3
987,879 + -2.4
987,879 + +0.1
987,879 + +1.0
987,879 + +0.6
987,879 + -1.4
987,880 - +0.3
987,880 - -1.0
987,880 - -0.7
987,880 - +1.3
987,880 - -0.2
987,880 - -0.8
987,940 + -1.3
987,941 - -2.5
988,103 + PfGW456L13_880 0.26 -2.9
988,104 - PfGW456L13_880 0.26 -1.0
988,104 - PfGW456L13_880 0.26 -1.5
988,104 - PfGW456L13_880 0.26 -0.4
988,123 + PfGW456L13_880 0.29 -0.8
988,124 - PfGW456L13_880 0.29 -0.5
988,124 - PfGW456L13_880 0.29 -0.9
988,148 - PfGW456L13_880 0.32 -0.1
988,148 - PfGW456L13_880 0.32 +0.3
988,222 - PfGW456L13_880 0.43 -0.7
988,570 + -0.1
988,570 + -1.2
988,570 + -0.8
988,570 + -0.6
988,570 + +0.8
988,570 + -0.7
988,570 + -0.8
988,570 + -0.1
988,570 + -1.0
988,570 + +1.8
988,570 + -1.7
988,570 + -0.8
988,570 + -1.7
988,570 + -0.9
988,571 - +0.3
988,571 - -0.5
988,571 - -0.2
988,571 - +0.6
988,571 - +1.3
988,571 - -1.0
988,571 - -0.5
988,571 - -2.4
988,571 - +0.2
988,571 - +0.1
988,571 - +0.2
988,571 - +0.4
988,571 - -0.2
988,571 - +0.9
988,571 - -1.0
988,571 - -1.7
988,575 - -0.5
988,633 + +1.1
988,633 + +0.2
988,633 + +0.3
988,633 + -0.2
988,633 + +0.6
988,633 + -2.2
988,633 + +0.0
988,633 + -0.7
988,633 + +0.3
988,633 + +0.7
988,633 + -0.4
988,634 - -1.2
988,634 - -0.0
988,634 - +0.3
988,634 - -1.2
988,634 - -1.4
988,634 - -1.7
988,634 - -0.5
988,634 - +0.2
988,728 + +1.6
988,728 + -0.5
989,073 + -1.1
989,073 + -0.1
989,073 + -0.5
989,073 + +1.0
989,073 + -1.3
989,073 + +0.5
989,073 + -1.9
989,073 + -0.2
989,074 - +0.1
989,074 - +0.5
989,074 - +0.3
989,149 + -0.8
989,162 + +1.2
989,162 + -0.5
989,162 + +1.7
989,162 + +2.5
989,162 + +2.6
989,162 + +1.0
989,162 + +2.0
989,230 + +1.8
989,230 + -0.5
989,234 + +3.9
989,272 + +0.8
989,285 + -0.3
989,301 + -0.9
989,301 + -2.5
989,301 + +0.6
989,309 + +1.6
989,309 + +0.4
989,320 + +3.0

Or see this region's nucleotide sequence