Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_879 and PfGW456L13_880 are separated by 255 nucleotides PfGW456L13_880 and PfGW456L13_881 are separated by 120 nucleotides PfGW456L13_881 and PfGW456L13_882 are separated by 247 nucleotides
PfGW456L13_879 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 986,877 to 987,662
_879
PfGW456L13_880 - Transcriptional regulator, GntR family, at 987,918 to 988,625
_880
PfGW456L13_881 - Thioredoxin, at 988,746 to 989,075
_881
PfGW456L13_882 - Transcription termination factor Rho, at 989,323 to 990,582
_882
Position (kb)
987
988
989 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 987.010 kb on + strand, within PfGW456L13_879 at 987.010 kb on + strand, within PfGW456L13_879 at 987.011 kb on - strand, within PfGW456L13_879 at 987.011 kb on - strand, within PfGW456L13_879 at 987.011 kb on - strand, within PfGW456L13_879 at 987.011 kb on - strand, within PfGW456L13_879 at 987.127 kb on + strand, within PfGW456L13_879 at 987.127 kb on + strand, within PfGW456L13_879 at 987.298 kb on + strand, within PfGW456L13_879 at 987.298 kb on + strand, within PfGW456L13_879 at 987.298 kb on + strand, within PfGW456L13_879 at 987.299 kb on - strand, within PfGW456L13_879 at 987.299 kb on - strand, within PfGW456L13_879 at 987.299 kb on - strand, within PfGW456L13_879 at 987.299 kb on - strand, within PfGW456L13_879 at 987.378 kb on + strand, within PfGW456L13_879 at 987.378 kb on + strand, within PfGW456L13_879 at 987.378 kb on + strand, within PfGW456L13_879 at 987.378 kb on + strand, within PfGW456L13_879 at 987.378 kb on + strand, within PfGW456L13_879 at 987.379 kb on - strand, within PfGW456L13_879 at 987.379 kb on - strand, within PfGW456L13_879 at 987.379 kb on - strand, within PfGW456L13_879 at 987.379 kb on - strand, within PfGW456L13_879 at 987.379 kb on - strand, within PfGW456L13_879 at 987.758 kb on - strand at 987.777 kb on - strand at 987.777 kb on - strand at 987.873 kb on + strand at 987.873 kb on + strand at 987.879 kb on + strand at 987.879 kb on + strand at 987.879 kb on + strand at 987.879 kb on + strand at 987.879 kb on + strand at 987.879 kb on + strand at 987.879 kb on + strand at 987.880 kb on - strand at 987.880 kb on - strand at 987.880 kb on - strand at 987.880 kb on - strand at 987.880 kb on - strand at 987.880 kb on - strand at 987.940 kb on + strand at 987.941 kb on - strand at 988.103 kb on + strand, within PfGW456L13_880 at 988.104 kb on - strand, within PfGW456L13_880 at 988.104 kb on - strand, within PfGW456L13_880 at 988.104 kb on - strand, within PfGW456L13_880 at 988.123 kb on + strand, within PfGW456L13_880 at 988.124 kb on - strand, within PfGW456L13_880 at 988.124 kb on - strand, within PfGW456L13_880 at 988.148 kb on - strand, within PfGW456L13_880 at 988.148 kb on - strand, within PfGW456L13_880 at 988.222 kb on - strand, within PfGW456L13_880 at 988.570 kb on + strand at 988.570 kb on + strand at 988.570 kb on + strand at 988.570 kb on + strand at 988.570 kb on + strand at 988.570 kb on + strand at 988.570 kb on + strand at 988.570 kb on + strand at 988.570 kb on + strand at 988.570 kb on + strand at 988.570 kb on + strand at 988.570 kb on + strand at 988.570 kb on + strand at 988.570 kb on + strand at 988.571 kb on - strand at 988.571 kb on - strand at 988.571 kb on - strand at 988.571 kb on - strand at 988.571 kb on - strand at 988.571 kb on - strand at 988.571 kb on - strand at 988.571 kb on - strand at 988.571 kb on - strand at 988.571 kb on - strand at 988.571 kb on - strand at 988.571 kb on - strand at 988.571 kb on - strand at 988.571 kb on - strand at 988.571 kb on - strand at 988.571 kb on - strand at 988.575 kb on - strand at 988.633 kb on + strand at 988.633 kb on + strand at 988.633 kb on + strand at 988.633 kb on + strand at 988.633 kb on + strand at 988.633 kb on + strand at 988.633 kb on + strand at 988.633 kb on + strand at 988.633 kb on + strand at 988.633 kb on + strand at 988.633 kb on + strand at 988.634 kb on - strand at 988.634 kb on - strand at 988.634 kb on - strand at 988.634 kb on - strand at 988.634 kb on - strand at 988.634 kb on - strand at 988.634 kb on - strand at 988.634 kb on - strand at 988.728 kb on + strand at 988.728 kb on + strand at 989.073 kb on + strand at 989.073 kb on + strand at 989.073 kb on + strand at 989.073 kb on + strand at 989.073 kb on + strand at 989.073 kb on + strand at 989.073 kb on + strand at 989.073 kb on + strand at 989.074 kb on - strand at 989.074 kb on - strand at 989.074 kb on - strand at 989.149 kb on + strand at 989.162 kb on + strand at 989.162 kb on + strand at 989.162 kb on + strand at 989.162 kb on + strand at 989.162 kb on + strand at 989.162 kb on + strand at 989.162 kb on + strand at 989.230 kb on + strand at 989.230 kb on + strand at 989.234 kb on + strand at 989.272 kb on + strand at 989.285 kb on + strand at 989.301 kb on + strand at 989.301 kb on + strand at 989.301 kb on + strand at 989.309 kb on + strand at 989.309 kb on + strand at 989.320 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 987,010 + PfGW456L13_879 0.17 -0.5 987,010 + PfGW456L13_879 0.17 +0.9 987,011 - PfGW456L13_879 0.17 +0.8 987,011 - PfGW456L13_879 0.17 +1.2 987,011 - PfGW456L13_879 0.17 +0.3 987,011 - PfGW456L13_879 0.17 +0.9 987,127 + PfGW456L13_879 0.32 -0.2 987,127 + PfGW456L13_879 0.32 +0.7 987,298 + PfGW456L13_879 0.54 +1.1 987,298 + PfGW456L13_879 0.54 +0.5 987,298 + PfGW456L13_879 0.54 -0.2 987,299 - PfGW456L13_879 0.54 +0.5 987,299 - PfGW456L13_879 0.54 +0.1 987,299 - PfGW456L13_879 0.54 +0.6 987,299 - PfGW456L13_879 0.54 -0.3 987,378 + PfGW456L13_879 0.64 -1.2 987,378 + PfGW456L13_879 0.64 +0.8 987,378 + PfGW456L13_879 0.64 +2.2 987,378 + PfGW456L13_879 0.64 -1.0 987,378 + PfGW456L13_879 0.64 +0.6 987,379 - PfGW456L13_879 0.64 +0.5 987,379 - PfGW456L13_879 0.64 +0.6 987,379 - PfGW456L13_879 0.64 -1.4 987,379 - PfGW456L13_879 0.64 +0.5 987,379 - PfGW456L13_879 0.64 -1.9 987,758 - +0.4 987,777 - -1.4 987,777 - +0.0 987,873 + +0.6 987,873 + +0.6 987,879 + -0.8 987,879 + +1.3 987,879 + -2.4 987,879 + +0.1 987,879 + +1.0 987,879 + +0.6 987,879 + -1.4 987,880 - +0.3 987,880 - -1.0 987,880 - -0.7 987,880 - +1.3 987,880 - -0.2 987,880 - -0.8 987,940 + -1.3 987,941 - -2.5 988,103 + PfGW456L13_880 0.26 -2.9 988,104 - PfGW456L13_880 0.26 -1.0 988,104 - PfGW456L13_880 0.26 -1.5 988,104 - PfGW456L13_880 0.26 -0.4 988,123 + PfGW456L13_880 0.29 -0.8 988,124 - PfGW456L13_880 0.29 -0.5 988,124 - PfGW456L13_880 0.29 -0.9 988,148 - PfGW456L13_880 0.32 -0.1 988,148 - PfGW456L13_880 0.32 +0.3 988,222 - PfGW456L13_880 0.43 -0.7 988,570 + -0.1 988,570 + -1.2 988,570 + -0.8 988,570 + -0.6 988,570 + +0.8 988,570 + -0.7 988,570 + -0.8 988,570 + -0.1 988,570 + -1.0 988,570 + +1.8 988,570 + -1.7 988,570 + -0.8 988,570 + -1.7 988,570 + -0.9 988,571 - +0.3 988,571 - -0.5 988,571 - -0.2 988,571 - +0.6 988,571 - +1.3 988,571 - -1.0 988,571 - -0.5 988,571 - -2.4 988,571 - +0.2 988,571 - +0.1 988,571 - +0.2 988,571 - +0.4 988,571 - -0.2 988,571 - +0.9 988,571 - -1.0 988,571 - -1.7 988,575 - -0.5 988,633 + +1.1 988,633 + +0.2 988,633 + +0.3 988,633 + -0.2 988,633 + +0.6 988,633 + -2.2 988,633 + +0.0 988,633 + -0.7 988,633 + +0.3 988,633 + +0.7 988,633 + -0.4 988,634 - -1.2 988,634 - -0.0 988,634 - +0.3 988,634 - -1.2 988,634 - -1.4 988,634 - -1.7 988,634 - -0.5 988,634 - +0.2 988,728 + +1.6 988,728 + -0.5 989,073 + -1.1 989,073 + -0.1 989,073 + -0.5 989,073 + +1.0 989,073 + -1.3 989,073 + +0.5 989,073 + -1.9 989,073 + -0.2 989,074 - +0.1 989,074 - +0.5 989,074 - +0.3 989,149 + -0.8 989,162 + +1.2 989,162 + -0.5 989,162 + +1.7 989,162 + +2.5 989,162 + +2.6 989,162 + +1.0 989,162 + +2.0 989,230 + +1.8 989,230 + -0.5 989,234 + +3.9 989,272 + +0.8 989,285 + -0.3 989,301 + -0.9 989,301 + -2.5 989,301 + +0.6 989,309 + +1.6 989,309 + +0.4 989,320 + +3.0
Or see this region's nucleotide sequence