Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5057

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5055 and PfGW456L13_5056 are separated by 4 nucleotidesPfGW456L13_5056 and PfGW456L13_5057 are separated by 10 nucleotidesPfGW456L13_5057 and PfGW456L13_5058 overlap by 1 nucleotides PfGW456L13_5055 - Dipeptide transport system permease protein DppB (TC 3.A.1.5.2), at 5,637,145 to 5,638,155 _5055 PfGW456L13_5056 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 5,638,160 to 5,639,077 _5056 PfGW456L13_5057 - Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2), at 5,639,088 to 5,640,056 _5057 PfGW456L13_5058 - Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2), at 5,640,056 to 5,641,036 _5058 Position (kb) 5639 5640 5641Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5638.104 kb on - strandat 5638.212 kb on - strandat 5638.223 kb on + strandat 5638.223 kb on + strandat 5638.468 kb on - strand, within PfGW456L13_5056at 5638.554 kb on + strand, within PfGW456L13_5056at 5638.555 kb on - strand, within PfGW456L13_5056at 5638.694 kb on + strand, within PfGW456L13_5056at 5638.694 kb on + strand, within PfGW456L13_5056at 5638.694 kb on + strand, within PfGW456L13_5056at 5638.695 kb on - strand, within PfGW456L13_5056at 5638.695 kb on - strand, within PfGW456L13_5056at 5638.742 kb on + strand, within PfGW456L13_5056at 5638.742 kb on + strand, within PfGW456L13_5056at 5638.742 kb on + strand, within PfGW456L13_5056at 5638.807 kb on + strand, within PfGW456L13_5056at 5638.807 kb on + strand, within PfGW456L13_5056at 5638.808 kb on - strand, within PfGW456L13_5056at 5638.899 kb on + strand, within PfGW456L13_5056at 5638.899 kb on + strand, within PfGW456L13_5056at 5638.899 kb on + strand, within PfGW456L13_5056at 5638.899 kb on + strand, within PfGW456L13_5056at 5638.900 kb on - strand, within PfGW456L13_5056at 5638.900 kb on - strand, within PfGW456L13_5056at 5638.949 kb on + strand, within PfGW456L13_5056at 5639.348 kb on + strand, within PfGW456L13_5057at 5639.400 kb on + strand, within PfGW456L13_5057at 5639.400 kb on + strand, within PfGW456L13_5057at 5639.400 kb on + strand, within PfGW456L13_5057at 5639.400 kb on + strand, within PfGW456L13_5057at 5639.401 kb on - strand, within PfGW456L13_5057at 5639.533 kb on - strand, within PfGW456L13_5057at 5639.641 kb on + strand, within PfGW456L13_5057at 5639.642 kb on - strand, within PfGW456L13_5057at 5639.642 kb on - strand, within PfGW456L13_5057at 5639.642 kb on - strand, within PfGW456L13_5057at 5639.766 kb on + strand, within PfGW456L13_5057at 5639.766 kb on + strand, within PfGW456L13_5057at 5639.767 kb on - strand, within PfGW456L13_5057at 5639.767 kb on - strand, within PfGW456L13_5057at 5639.916 kb on + strand, within PfGW456L13_5057at 5639.916 kb on + strand, within PfGW456L13_5057at 5639.959 kb on - strand, within PfGW456L13_5057at 5640.071 kb on - strandat 5640.192 kb on + strand, within PfGW456L13_5058at 5640.494 kb on + strand, within PfGW456L13_5058at 5640.674 kb on + strand, within PfGW456L13_5058at 5640.674 kb on + strand, within PfGW456L13_5058at 5640.674 kb on + strand, within PfGW456L13_5058at 5640.674 kb on + strand, within PfGW456L13_5058at 5640.674 kb on + strand, within PfGW456L13_5058at 5640.675 kb on - strand, within PfGW456L13_5058at 5640.675 kb on - strand, within PfGW456L13_5058at 5640.675 kb on - strand, within PfGW456L13_5058at 5640.675 kb on - strand, within PfGW456L13_5058at 5640.705 kb on + strand, within PfGW456L13_5058at 5640.705 kb on + strand, within PfGW456L13_5058at 5640.706 kb on - strand, within PfGW456L13_5058at 5640.737 kb on + strand, within PfGW456L13_5058at 5640.737 kb on + strand, within PfGW456L13_5058at 5640.737 kb on + strand, within PfGW456L13_5058at 5640.737 kb on + strand, within PfGW456L13_5058at 5640.737 kb on + strand, within PfGW456L13_5058at 5640.737 kb on + strand, within PfGW456L13_5058at 5640.738 kb on - strand, within PfGW456L13_5058at 5640.738 kb on - strand, within PfGW456L13_5058at 5640.738 kb on - strand, within PfGW456L13_5058at 5640.738 kb on - strand, within PfGW456L13_5058at 5640.738 kb on - strand, within PfGW456L13_5058at 5640.738 kb on - strand, within PfGW456L13_5058at 5640.738 kb on - strand, within PfGW456L13_5058at 5640.738 kb on - strand, within PfGW456L13_5058at 5640.779 kb on + strand, within PfGW456L13_5058at 5640.779 kb on + strand, within PfGW456L13_5058at 5640.779 kb on + strand, within PfGW456L13_5058at 5640.779 kb on + strand, within PfGW456L13_5058at 5640.780 kb on - strand, within PfGW456L13_5058at 5640.800 kb on + strand, within PfGW456L13_5058at 5640.800 kb on + strand, within PfGW456L13_5058at 5640.870 kb on + strand, within PfGW456L13_5058at 5641.005 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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5,638,104 - -1.3
5,638,212 - -1.9
5,638,223 + -2.5
5,638,223 + -2.6
5,638,468 - PfGW456L13_5056 0.34 -2.9
5,638,554 + PfGW456L13_5056 0.43 -1.9
5,638,555 - PfGW456L13_5056 0.43 -0.5
5,638,694 + PfGW456L13_5056 0.58 -1.0
5,638,694 + PfGW456L13_5056 0.58 -1.9
5,638,694 + PfGW456L13_5056 0.58 -1.6
5,638,695 - PfGW456L13_5056 0.58 +0.3
5,638,695 - PfGW456L13_5056 0.58 -1.3
5,638,742 + PfGW456L13_5056 0.63 -0.9
5,638,742 + PfGW456L13_5056 0.63 -1.3
5,638,742 + PfGW456L13_5056 0.63 -1.1
5,638,807 + PfGW456L13_5056 0.70 -0.5
5,638,807 + PfGW456L13_5056 0.70 -1.6
5,638,808 - PfGW456L13_5056 0.71 -2.4
5,638,899 + PfGW456L13_5056 0.81 -2.6
5,638,899 + PfGW456L13_5056 0.81 -2.1
5,638,899 + PfGW456L13_5056 0.81 -2.2
5,638,899 + PfGW456L13_5056 0.81 -1.4
5,638,900 - PfGW456L13_5056 0.81 -1.7
5,638,900 - PfGW456L13_5056 0.81 -0.9
5,638,949 + PfGW456L13_5056 0.86 -0.8
5,639,348 + PfGW456L13_5057 0.27 -0.7
5,639,400 + PfGW456L13_5057 0.32 -1.7
5,639,400 + PfGW456L13_5057 0.32 -2.8
5,639,400 + PfGW456L13_5057 0.32 +2.0
5,639,400 + PfGW456L13_5057 0.32 -1.4
5,639,401 - PfGW456L13_5057 0.32 -0.6
5,639,533 - PfGW456L13_5057 0.46 -2.0
5,639,641 + PfGW456L13_5057 0.57 -2.6
5,639,642 - PfGW456L13_5057 0.57 -0.0
5,639,642 - PfGW456L13_5057 0.57 -2.0
5,639,642 - PfGW456L13_5057 0.57 -2.3
5,639,766 + PfGW456L13_5057 0.70 +0.4
5,639,766 + PfGW456L13_5057 0.70 -0.2
5,639,767 - PfGW456L13_5057 0.70 -0.7
5,639,767 - PfGW456L13_5057 0.70 -2.0
5,639,916 + PfGW456L13_5057 0.85 -1.2
5,639,916 + PfGW456L13_5057 0.85 -1.7
5,639,959 - PfGW456L13_5057 0.90 -1.9
5,640,071 - -0.6
5,640,192 + PfGW456L13_5058 0.14 +0.8
5,640,494 + PfGW456L13_5058 0.45 -2.2
5,640,674 + PfGW456L13_5058 0.63 -1.5
5,640,674 + PfGW456L13_5058 0.63 +0.7
5,640,674 + PfGW456L13_5058 0.63 -2.5
5,640,674 + PfGW456L13_5058 0.63 -1.8
5,640,674 + PfGW456L13_5058 0.63 -1.9
5,640,675 - PfGW456L13_5058 0.63 -2.3
5,640,675 - PfGW456L13_5058 0.63 -2.2
5,640,675 - PfGW456L13_5058 0.63 -2.3
5,640,675 - PfGW456L13_5058 0.63 -1.9
5,640,705 + PfGW456L13_5058 0.66 -2.8
5,640,705 + PfGW456L13_5058 0.66 -1.8
5,640,706 - PfGW456L13_5058 0.66 -1.8
5,640,737 + PfGW456L13_5058 0.69 -2.5
5,640,737 + PfGW456L13_5058 0.69 +1.4
5,640,737 + PfGW456L13_5058 0.69 -1.2
5,640,737 + PfGW456L13_5058 0.69 -1.5
5,640,737 + PfGW456L13_5058 0.69 -1.0
5,640,737 + PfGW456L13_5058 0.69 -3.1
5,640,738 - PfGW456L13_5058 0.70 -2.4
5,640,738 - PfGW456L13_5058 0.70 -2.4
5,640,738 - PfGW456L13_5058 0.70 -2.8
5,640,738 - PfGW456L13_5058 0.70 +0.2
5,640,738 - PfGW456L13_5058 0.70 -0.3
5,640,738 - PfGW456L13_5058 0.70 -1.0
5,640,738 - PfGW456L13_5058 0.70 -0.1
5,640,738 - PfGW456L13_5058 0.70 -2.9
5,640,779 + PfGW456L13_5058 0.74 -2.4
5,640,779 + PfGW456L13_5058 0.74 -2.6
5,640,779 + PfGW456L13_5058 0.74 -1.0
5,640,779 + PfGW456L13_5058 0.74 -1.8
5,640,780 - PfGW456L13_5058 0.74 -2.0
5,640,800 + PfGW456L13_5058 0.76 +0.1
5,640,800 + PfGW456L13_5058 0.76 -2.0
5,640,870 + PfGW456L13_5058 0.83 -2.4
5,641,005 - -1.5

Or see this region's nucleotide sequence