Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5000

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4999 and PfGW456L13_5000 are separated by 2 nucleotidesPfGW456L13_5000 and PfGW456L13_5001 are separated by 126 nucleotidesPfGW456L13_5001 and PfGW456L13_5002 are separated by 125 nucleotides PfGW456L13_4999 - Histidinol-phosphate aminotransferase (EC 2.6.1.9), at 5,577,231 to 5,578,283 _4999 PfGW456L13_5000 - Histidinol dehydrogenase (EC 1.1.1.23), at 5,578,286 to 5,579,623 _5000 PfGW456L13_5001 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 5,579,750 to 5,580,385 _5001 PfGW456L13_5002 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7), at 5,580,511 to 5,581,776 _5002 Position (kb) 5578 5579 5580Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5577.502 kb on + strand, within PfGW456L13_4999at 5577.733 kb on + strand, within PfGW456L13_4999at 5577.733 kb on + strand, within PfGW456L13_4999at 5577.733 kb on + strand, within PfGW456L13_4999at 5577.733 kb on + strand, within PfGW456L13_4999at 5577.733 kb on + strand, within PfGW456L13_4999at 5577.734 kb on - strand, within PfGW456L13_4999at 5577.734 kb on - strand, within PfGW456L13_4999at 5577.734 kb on - strand, within PfGW456L13_4999at 5577.734 kb on - strand, within PfGW456L13_4999at 5577.734 kb on - strand, within PfGW456L13_4999at 5577.734 kb on - strand, within PfGW456L13_4999at 5577.734 kb on - strand, within PfGW456L13_4999at 5577.734 kb on - strand, within PfGW456L13_4999at 5577.862 kb on + strand, within PfGW456L13_4999at 5577.862 kb on + strand, within PfGW456L13_4999at 5577.863 kb on - strand, within PfGW456L13_4999at 5577.923 kb on - strand, within PfGW456L13_4999at 5577.934 kb on + strand, within PfGW456L13_4999at 5577.934 kb on + strand, within PfGW456L13_4999at 5577.935 kb on - strand, within PfGW456L13_4999at 5577.952 kb on + strand, within PfGW456L13_4999at 5577.952 kb on + strand, within PfGW456L13_4999at 5577.953 kb on - strand, within PfGW456L13_4999at 5577.953 kb on - strand, within PfGW456L13_4999at 5578.066 kb on + strand, within PfGW456L13_4999at 5578.066 kb on + strand, within PfGW456L13_4999at 5578.066 kb on + strand, within PfGW456L13_4999at 5578.067 kb on - strand, within PfGW456L13_4999at 5578.067 kb on - strand, within PfGW456L13_4999at 5578.067 kb on - strand, within PfGW456L13_4999at 5578.067 kb on - strand, within PfGW456L13_4999at 5578.070 kb on - strand, within PfGW456L13_4999at 5578.070 kb on - strand, within PfGW456L13_4999at 5578.197 kb on + strandat 5578.198 kb on - strandat 5578.240 kb on + strandat 5578.240 kb on + strandat 5578.240 kb on + strandat 5578.240 kb on + strandat 5578.240 kb on + strandat 5578.240 kb on + strandat 5578.240 kb on + strandat 5578.241 kb on - strandat 5578.241 kb on - strandat 5578.241 kb on - strandat 5578.241 kb on - strandat 5578.241 kb on - strandat 5578.241 kb on - strandat 5578.241 kb on - strandat 5578.241 kb on - strandat 5578.277 kb on + strandat 5578.452 kb on + strand, within PfGW456L13_5000at 5578.453 kb on - strand, within PfGW456L13_5000at 5578.453 kb on - strand, within PfGW456L13_5000at 5578.453 kb on - strand, within PfGW456L13_5000at 5578.453 kb on - strand, within PfGW456L13_5000at 5578.521 kb on + strand, within PfGW456L13_5000at 5578.522 kb on - strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.984 kb on + strand, within PfGW456L13_5000at 5578.985 kb on - strand, within PfGW456L13_5000at 5579.213 kb on + strand, within PfGW456L13_5000at 5579.217 kb on + strand, within PfGW456L13_5000at 5579.217 kb on + strand, within PfGW456L13_5000at 5579.217 kb on + strand, within PfGW456L13_5000at 5579.217 kb on + strand, within PfGW456L13_5000at 5579.218 kb on - strand, within PfGW456L13_5000at 5579.218 kb on - strand, within PfGW456L13_5000at 5579.218 kb on - strand, within PfGW456L13_5000at 5579.281 kb on - strand, within PfGW456L13_5000at 5579.314 kb on - strand, within PfGW456L13_5000at 5579.314 kb on - strand, within PfGW456L13_5000at 5579.314 kb on - strand, within PfGW456L13_5000at 5579.623 kb on + strandat 5579.624 kb on - strandat 5579.637 kb on + strandat 5579.637 kb on + strandat 5579.637 kb on + strandat 5579.637 kb on + strandat 5579.638 kb on - strandat 5579.638 kb on - strandat 5579.668 kb on + strandat 5579.668 kb on + strandat 5579.668 kb on + strandat 5579.668 kb on + strandat 5579.668 kb on + strandat 5579.668 kb on + strandat 5579.668 kb on + strandat 5579.669 kb on - strandat 5579.669 kb on - strandat 5579.669 kb on - strandat 5579.706 kb on + strandat 5579.717 kb on + strandat 5579.717 kb on + strandat 5579.718 kb on - strandat 5579.732 kb on + strandat 5579.733 kb on - strandat 5579.908 kb on + strand, within PfGW456L13_5001at 5579.909 kb on - strand, within PfGW456L13_5001at 5579.977 kb on - strand, within PfGW456L13_5001at 5580.018 kb on + strand, within PfGW456L13_5001at 5580.018 kb on + strand, within PfGW456L13_5001at 5580.019 kb on - strand, within PfGW456L13_5001at 5580.138 kb on + strand, within PfGW456L13_5001at 5580.213 kb on + strand, within PfGW456L13_5001at 5580.213 kb on + strand, within PfGW456L13_5001at 5580.213 kb on + strand, within PfGW456L13_5001at 5580.213 kb on + strand, within PfGW456L13_5001at 5580.214 kb on - strand, within PfGW456L13_5001at 5580.214 kb on - strand, within PfGW456L13_5001at 5580.214 kb on - strand, within PfGW456L13_5001at 5580.214 kb on - strand, within PfGW456L13_5001at 5580.214 kb on - strand, within PfGW456L13_5001at 5580.214 kb on - strand, within PfGW456L13_5001at 5580.251 kb on + strand, within PfGW456L13_5001at 5580.251 kb on + strand, within PfGW456L13_5001at 5580.251 kb on + strand, within PfGW456L13_5001at 5580.251 kb on + strand, within PfGW456L13_5001at 5580.251 kb on + strand, within PfGW456L13_5001at 5580.251 kb on + strand, within PfGW456L13_5001at 5580.251 kb on + strand, within PfGW456L13_5001at 5580.251 kb on + strand, within PfGW456L13_5001at 5580.251 kb on + strand, within PfGW456L13_5001at 5580.251 kb on + strand, within PfGW456L13_5001at 5580.252 kb on - strand, within PfGW456L13_5001at 5580.252 kb on - strand, within PfGW456L13_5001at 5580.252 kb on - strand, within PfGW456L13_5001at 5580.252 kb on - strand, within PfGW456L13_5001at 5580.252 kb on - strand, within PfGW456L13_5001at 5580.252 kb on - strand, within PfGW456L13_5001at 5580.252 kb on - strand, within PfGW456L13_5001at 5580.252 kb on - strand, within PfGW456L13_5001at 5580.402 kb on + strandat 5580.403 kb on - strandat 5580.410 kb on + strandat 5580.410 kb on + strandat 5580.411 kb on - strandat 5580.411 kb on - strandat 5580.411 kb on - strandat 5580.411 kb on - strandat 5580.411 kb on - strandat 5580.411 kb on - strandat 5580.411 kb on - strandat 5580.492 kb on + strandat 5580.493 kb on - strandat 5580.493 kb on - strandat 5580.493 kb on - strandat 5580.493 kb on - strandat 5580.493 kb on - strandat 5580.500 kb on + strandat 5580.500 kb on + strandat 5580.500 kb on + strandat 5580.501 kb on - strandat 5580.501 kb on - strandat 5580.501 kb on - strandat 5580.501 kb on - strandat 5580.501 kb on - strandat 5580.512 kb on + strandat 5580.512 kb on + strandat 5580.512 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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5,577,502 + PfGW456L13_4999 0.26 -0.1
5,577,733 + PfGW456L13_4999 0.48 -1.5
5,577,733 + PfGW456L13_4999 0.48 -0.3
5,577,733 + PfGW456L13_4999 0.48 -1.9
5,577,733 + PfGW456L13_4999 0.48 -1.8
5,577,733 + PfGW456L13_4999 0.48 -0.8
5,577,734 - PfGW456L13_4999 0.48 -1.6
5,577,734 - PfGW456L13_4999 0.48 -0.6
5,577,734 - PfGW456L13_4999 0.48 -1.6
5,577,734 - PfGW456L13_4999 0.48 -1.4
5,577,734 - PfGW456L13_4999 0.48 -3.0
5,577,734 - PfGW456L13_4999 0.48 -1.7
5,577,734 - PfGW456L13_4999 0.48 -0.9
5,577,734 - PfGW456L13_4999 0.48 -1.5
5,577,862 + PfGW456L13_4999 0.60 -2.1
5,577,862 + PfGW456L13_4999 0.60 +1.2
5,577,863 - PfGW456L13_4999 0.60 -2.1
5,577,923 - PfGW456L13_4999 0.66 -0.8
5,577,934 + PfGW456L13_4999 0.67 +0.2
5,577,934 + PfGW456L13_4999 0.67 -1.7
5,577,935 - PfGW456L13_4999 0.67 -0.3
5,577,952 + PfGW456L13_4999 0.68 -1.6
5,577,952 + PfGW456L13_4999 0.68 -0.7
5,577,953 - PfGW456L13_4999 0.69 -1.6
5,577,953 - PfGW456L13_4999 0.69 -2.4
5,578,066 + PfGW456L13_4999 0.79 -0.6
5,578,066 + PfGW456L13_4999 0.79 +0.6
5,578,066 + PfGW456L13_4999 0.79 +0.9
5,578,067 - PfGW456L13_4999 0.79 -2.5
5,578,067 - PfGW456L13_4999 0.79 -2.3
5,578,067 - PfGW456L13_4999 0.79 -0.2
5,578,067 - PfGW456L13_4999 0.79 -0.2
5,578,070 - PfGW456L13_4999 0.80 -2.6
5,578,070 - PfGW456L13_4999 0.80 -0.4
5,578,197 + -1.4
5,578,198 - +1.2
5,578,240 + -2.2
5,578,240 + +0.1
5,578,240 + -0.2
5,578,240 + -1.7
5,578,240 + -2.0
5,578,240 + -1.5
5,578,240 + +0.2
5,578,241 - +0.2
5,578,241 - -0.7
5,578,241 - +0.7
5,578,241 - -0.5
5,578,241 - -1.1
5,578,241 - -0.8
5,578,241 - +0.3
5,578,241 - +0.4
5,578,277 + -1.1
5,578,452 + PfGW456L13_5000 0.12 -0.2
5,578,453 - PfGW456L13_5000 0.12 -2.6
5,578,453 - PfGW456L13_5000 0.12 -1.9
5,578,453 - PfGW456L13_5000 0.12 -1.3
5,578,453 - PfGW456L13_5000 0.12 -0.2
5,578,521 + PfGW456L13_5000 0.18 -2.8
5,578,522 - PfGW456L13_5000 0.18 -1.4
5,578,959 + PfGW456L13_5000 0.50 -2.9
5,578,959 + PfGW456L13_5000 0.50 -2.3
5,578,959 + PfGW456L13_5000 0.50 -2.1
5,578,959 + PfGW456L13_5000 0.50 -1.7
5,578,959 + PfGW456L13_5000 0.50 -2.9
5,578,959 + PfGW456L13_5000 0.50 -0.7
5,578,959 + PfGW456L13_5000 0.50 +0.2
5,578,959 + PfGW456L13_5000 0.50 -0.8
5,578,959 + PfGW456L13_5000 0.50 -2.4
5,578,959 + PfGW456L13_5000 0.50 -2.4
5,578,959 + PfGW456L13_5000 0.50 -3.2
5,578,959 + PfGW456L13_5000 0.50 -1.1
5,578,959 + PfGW456L13_5000 0.50 -0.7
5,578,960 - PfGW456L13_5000 0.50 -0.6
5,578,960 - PfGW456L13_5000 0.50 -1.2
5,578,960 - PfGW456L13_5000 0.50 -1.8
5,578,960 - PfGW456L13_5000 0.50 -2.1
5,578,960 - PfGW456L13_5000 0.50 -1.1
5,578,960 - PfGW456L13_5000 0.50 -3.2
5,578,960 - PfGW456L13_5000 0.50 -1.7
5,578,960 - PfGW456L13_5000 0.50 -1.3
5,578,960 - PfGW456L13_5000 0.50 -2.0
5,578,960 - PfGW456L13_5000 0.50 -1.7
5,578,960 - PfGW456L13_5000 0.50 -1.6
5,578,960 - PfGW456L13_5000 0.50 -1.2
5,578,960 - PfGW456L13_5000 0.50 -2.3
5,578,960 - PfGW456L13_5000 0.50 -2.6
5,578,984 + PfGW456L13_5000 0.52 -0.2
5,578,985 - PfGW456L13_5000 0.52 -1.8
5,579,213 + PfGW456L13_5000 0.69 -1.9
5,579,217 + PfGW456L13_5000 0.70 -2.0
5,579,217 + PfGW456L13_5000 0.70 -2.9
5,579,217 + PfGW456L13_5000 0.70 -1.2
5,579,217 + PfGW456L13_5000 0.70 -2.1
5,579,218 - PfGW456L13_5000 0.70 -2.1
5,579,218 - PfGW456L13_5000 0.70 -2.6
5,579,218 - PfGW456L13_5000 0.70 -2.7
5,579,281 - PfGW456L13_5000 0.74 -2.6
5,579,314 - PfGW456L13_5000 0.77 -1.5
5,579,314 - PfGW456L13_5000 0.77 -3.1
5,579,314 - PfGW456L13_5000 0.77 -1.7
5,579,623 + -1.5
5,579,624 - -3.3
5,579,637 + -2.1
5,579,637 + -0.6
5,579,637 + -2.1
5,579,637 + -2.2
5,579,638 - -1.2
5,579,638 - +0.0
5,579,668 + -1.1
5,579,668 + -1.6
5,579,668 + -0.9
5,579,668 + -1.3
5,579,668 + -2.4
5,579,668 + -1.9
5,579,668 + -0.6
5,579,669 - -0.0
5,579,669 - -0.0
5,579,669 - +2.6
5,579,706 + -1.0
5,579,717 + -1.0
5,579,717 + -2.7
5,579,718 - +0.2
5,579,732 + -2.3
5,579,733 - -0.2
5,579,908 + PfGW456L13_5001 0.25 -2.5
5,579,909 - PfGW456L13_5001 0.25 -0.5
5,579,977 - PfGW456L13_5001 0.36 -2.1
5,580,018 + PfGW456L13_5001 0.42 -0.3
5,580,018 + PfGW456L13_5001 0.42 -2.0
5,580,019 - PfGW456L13_5001 0.42 +1.4
5,580,138 + PfGW456L13_5001 0.61 -1.9
5,580,213 + PfGW456L13_5001 0.73 -0.9
5,580,213 + PfGW456L13_5001 0.73 -1.4
5,580,213 + PfGW456L13_5001 0.73 -2.5
5,580,213 + PfGW456L13_5001 0.73 -2.0
5,580,214 - PfGW456L13_5001 0.73 -2.6
5,580,214 - PfGW456L13_5001 0.73 -2.4
5,580,214 - PfGW456L13_5001 0.73 -2.7
5,580,214 - PfGW456L13_5001 0.73 -0.7
5,580,214 - PfGW456L13_5001 0.73 -0.3
5,580,214 - PfGW456L13_5001 0.73 +0.4
5,580,251 + PfGW456L13_5001 0.79 -1.2
5,580,251 + PfGW456L13_5001 0.79 -1.9
5,580,251 + PfGW456L13_5001 0.79 -2.0
5,580,251 + PfGW456L13_5001 0.79 -2.4
5,580,251 + PfGW456L13_5001 0.79 -1.9
5,580,251 + PfGW456L13_5001 0.79 -0.2
5,580,251 + PfGW456L13_5001 0.79 +2.0
5,580,251 + PfGW456L13_5001 0.79 -2.2
5,580,251 + PfGW456L13_5001 0.79 -1.7
5,580,251 + PfGW456L13_5001 0.79 -1.8
5,580,252 - PfGW456L13_5001 0.79 -2.8
5,580,252 - PfGW456L13_5001 0.79 -2.2
5,580,252 - PfGW456L13_5001 0.79 -2.1
5,580,252 - PfGW456L13_5001 0.79 -2.5
5,580,252 - PfGW456L13_5001 0.79 -1.4
5,580,252 - PfGW456L13_5001 0.79 -2.8
5,580,252 - PfGW456L13_5001 0.79 -1.5
5,580,252 - PfGW456L13_5001 0.79 -0.0
5,580,402 + -2.4
5,580,403 - +0.2
5,580,410 + -2.4
5,580,410 + -2.4
5,580,411 - -1.1
5,580,411 - -0.1
5,580,411 - +1.0
5,580,411 - -0.4
5,580,411 - -1.9
5,580,411 - -0.4
5,580,411 - +0.4
5,580,492 + -2.3
5,580,493 - -1.8
5,580,493 - +0.4
5,580,493 - +0.5
5,580,493 - -2.0
5,580,493 - +0.4
5,580,500 + -0.9
5,580,500 + -1.7
5,580,500 + -1.4
5,580,501 - -0.5
5,580,501 - -1.0
5,580,501 - +0.4
5,580,501 - +0.9
5,580,501 - -0.8
5,580,512 + -0.2
5,580,512 + -1.9
5,580,512 + -1.9

Or see this region's nucleotide sequence