Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4749

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4748 and PfGW456L13_4749 are separated by 98 nucleotidesPfGW456L13_4749 and PfGW456L13_4750 are separated by 51 nucleotides PfGW456L13_4748 - Transcriptional regulator, TetR family, at 5,290,796 to 5,291,512 _4748 PfGW456L13_4749 - Lysyl-tRNA synthetase (class II) (EC 6.1.1.6), at 5,291,611 to 5,293,176 _4749 PfGW456L13_4750 - Peptide chain release factor 2; programmed frameshift-containing, at 5,293,228 to 5,294,109 _4750 Position (kb) 5291 5292 5293 5294Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5290.670 kb on + strandat 5290.671 kb on - strandat 5290.671 kb on - strandat 5290.824 kb on + strandat 5290.824 kb on + strandat 5290.824 kb on + strandat 5290.824 kb on + strandat 5290.825 kb on - strandat 5290.825 kb on - strandat 5290.871 kb on + strand, within PfGW456L13_4748at 5290.871 kb on + strand, within PfGW456L13_4748at 5290.955 kb on + strand, within PfGW456L13_4748at 5291.103 kb on + strand, within PfGW456L13_4748at 5291.103 kb on + strand, within PfGW456L13_4748at 5291.104 kb on - strand, within PfGW456L13_4748at 5291.104 kb on - strand, within PfGW456L13_4748at 5291.125 kb on + strand, within PfGW456L13_4748at 5291.125 kb on + strand, within PfGW456L13_4748at 5291.223 kb on + strand, within PfGW456L13_4748at 5291.223 kb on + strand, within PfGW456L13_4748at 5291.223 kb on + strand, within PfGW456L13_4748at 5291.223 kb on + strand, within PfGW456L13_4748at 5291.223 kb on + strand, within PfGW456L13_4748at 5291.224 kb on - strand, within PfGW456L13_4748at 5291.224 kb on - strand, within PfGW456L13_4748at 5291.224 kb on - strand, within PfGW456L13_4748at 5291.244 kb on + strand, within PfGW456L13_4748at 5291.245 kb on - strand, within PfGW456L13_4748at 5291.245 kb on - strand, within PfGW456L13_4748at 5291.245 kb on - strand, within PfGW456L13_4748at 5291.257 kb on + strand, within PfGW456L13_4748at 5291.279 kb on - strand, within PfGW456L13_4748at 5291.289 kb on + strand, within PfGW456L13_4748at 5291.289 kb on + strand, within PfGW456L13_4748at 5291.289 kb on + strand, within PfGW456L13_4748at 5291.290 kb on - strand, within PfGW456L13_4748at 5291.290 kb on - strand, within PfGW456L13_4748at 5291.292 kb on + strand, within PfGW456L13_4748at 5291.292 kb on + strand, within PfGW456L13_4748at 5291.292 kb on + strand, within PfGW456L13_4748at 5291.293 kb on - strand, within PfGW456L13_4748at 5291.293 kb on - strand, within PfGW456L13_4748at 5291.293 kb on - strand, within PfGW456L13_4748at 5291.445 kb on + strandat 5291.519 kb on + strandat 5291.519 kb on + strandat 5291.519 kb on + strandat 5291.520 kb on - strandat 5291.520 kb on - strandat 5291.539 kb on + strandat 5291.540 kb on - strandat 5291.550 kb on + strandat 5291.550 kb on + strandat 5291.551 kb on - strandat 5291.558 kb on + strandat 5291.572 kb on + strandat 5291.572 kb on + strandat 5291.612 kb on + strandat 5291.612 kb on + strandat 5291.613 kb on - strandat 5291.613 kb on - strandat 5293.124 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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5,290,670 + -0.4
5,290,671 - +1.0
5,290,671 - -1.4
5,290,824 + +0.9
5,290,824 + +1.4
5,290,824 + +1.2
5,290,824 + +0.5
5,290,825 - -0.4
5,290,825 - +0.6
5,290,871 + PfGW456L13_4748 0.10 +0.4
5,290,871 + PfGW456L13_4748 0.10 +1.2
5,290,955 + PfGW456L13_4748 0.22 -0.4
5,291,103 + PfGW456L13_4748 0.43 -0.3
5,291,103 + PfGW456L13_4748 0.43 -1.3
5,291,104 - PfGW456L13_4748 0.43 -0.6
5,291,104 - PfGW456L13_4748 0.43 +1.5
5,291,125 + PfGW456L13_4748 0.46 +1.7
5,291,125 + PfGW456L13_4748 0.46 +0.2
5,291,223 + PfGW456L13_4748 0.60 +0.8
5,291,223 + PfGW456L13_4748 0.60 +0.2
5,291,223 + PfGW456L13_4748 0.60 +1.6
5,291,223 + PfGW456L13_4748 0.60 +1.2
5,291,223 + PfGW456L13_4748 0.60 +1.4
5,291,224 - PfGW456L13_4748 0.60 -1.0
5,291,224 - PfGW456L13_4748 0.60 +1.4
5,291,224 - PfGW456L13_4748 0.60 +1.7
5,291,244 + PfGW456L13_4748 0.62 +0.4
5,291,245 - PfGW456L13_4748 0.63 +0.7
5,291,245 - PfGW456L13_4748 0.63 +1.0
5,291,245 - PfGW456L13_4748 0.63 +0.9
5,291,257 + PfGW456L13_4748 0.64 +0.9
5,291,279 - PfGW456L13_4748 0.67 -0.3
5,291,289 + PfGW456L13_4748 0.69 +0.8
5,291,289 + PfGW456L13_4748 0.69 +1.2
5,291,289 + PfGW456L13_4748 0.69 +1.6
5,291,290 - PfGW456L13_4748 0.69 +1.5
5,291,290 - PfGW456L13_4748 0.69 +0.6
5,291,292 + PfGW456L13_4748 0.69 +0.3
5,291,292 + PfGW456L13_4748 0.69 +1.4
5,291,292 + PfGW456L13_4748 0.69 +0.9
5,291,293 - PfGW456L13_4748 0.69 +0.4
5,291,293 - PfGW456L13_4748 0.69 +1.0
5,291,293 - PfGW456L13_4748 0.69 -1.3
5,291,445 + +0.0
5,291,519 + +1.4
5,291,519 + +0.4
5,291,519 + +0.4
5,291,520 - -2.6
5,291,520 - +1.4
5,291,539 + +1.6
5,291,540 - -0.8
5,291,550 + +0.8
5,291,550 + +2.5
5,291,551 - -0.6
5,291,558 + +0.9
5,291,572 + +0.9
5,291,572 + -1.1
5,291,612 + -0.1
5,291,612 + +2.9
5,291,613 - -0.7
5,291,613 - -1.4
5,293,124 - -1.4

Or see this region's nucleotide sequence