Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_473

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_472 and PfGW456L13_473 are separated by 134 nucleotidesPfGW456L13_473 and PfGW456L13_474 are separated by 168 nucleotides PfGW456L13_472 - Outer membrane receptor proteins, mostly Fe transport, at 540,116 to 542,476 _472 PfGW456L13_473 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 542,611 to 543,531 _473 PfGW456L13_474 - LysR family transcriptional regulator PA0191, at 543,700 to 544,635 _474 Position (kb) 542 543 544Strain fitness (log2 ratio) -2 -1 0 1 2 3at 541.632 kb on + strand, within PfGW456L13_472at 541.632 kb on + strand, within PfGW456L13_472at 541.632 kb on + strand, within PfGW456L13_472at 541.632 kb on + strand, within PfGW456L13_472at 541.633 kb on - strand, within PfGW456L13_472at 541.671 kb on + strand, within PfGW456L13_472at 541.872 kb on + strand, within PfGW456L13_472at 541.872 kb on + strand, within PfGW456L13_472at 541.873 kb on - strand, within PfGW456L13_472at 541.873 kb on - strand, within PfGW456L13_472at 541.873 kb on - strand, within PfGW456L13_472at 541.873 kb on - strand, within PfGW456L13_472at 542.031 kb on - strand, within PfGW456L13_472at 542.055 kb on + strand, within PfGW456L13_472at 542.070 kb on + strand, within PfGW456L13_472at 542.070 kb on + strand, within PfGW456L13_472at 542.070 kb on + strand, within PfGW456L13_472at 542.071 kb on - strand, within PfGW456L13_472at 542.071 kb on - strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.158 kb on - strand, within PfGW456L13_472at 542.158 kb on - strand, within PfGW456L13_472at 542.158 kb on - strand, within PfGW456L13_472at 542.158 kb on - strand, within PfGW456L13_472at 542.376 kb on + strandat 542.376 kb on + strandat 542.376 kb on + strandat 542.476 kb on + strandat 542.476 kb on + strandat 542.476 kb on + strandat 542.476 kb on + strandat 542.476 kb on + strandat 542.476 kb on + strandat 542.477 kb on - strandat 542.477 kb on - strandat 542.477 kb on - strandat 542.477 kb on - strandat 542.477 kb on - strandat 542.499 kb on + strandat 542.499 kb on + strandat 542.499 kb on + strandat 542.499 kb on + strandat 542.499 kb on + strandat 542.499 kb on + strandat 542.499 kb on + strandat 542.500 kb on - strandat 542.500 kb on - strandat 542.500 kb on - strandat 542.723 kb on + strand, within PfGW456L13_473at 542.724 kb on - strand, within PfGW456L13_473at 542.739 kb on - strand, within PfGW456L13_473at 542.867 kb on + strand, within PfGW456L13_473at 542.958 kb on - strand, within PfGW456L13_473at 543.029 kb on + strand, within PfGW456L13_473at 543.035 kb on + strand, within PfGW456L13_473at 543.035 kb on + strand, within PfGW456L13_473at 543.036 kb on - strand, within PfGW456L13_473at 543.036 kb on - strand, within PfGW456L13_473at 543.101 kb on + strand, within PfGW456L13_473at 543.102 kb on - strand, within PfGW456L13_473at 543.377 kb on + strand, within PfGW456L13_473at 543.377 kb on + strand, within PfGW456L13_473at 543.377 kb on + strand, within PfGW456L13_473at 543.377 kb on + strand, within PfGW456L13_473at 543.377 kb on + strand, within PfGW456L13_473at 543.377 kb on + strand, within PfGW456L13_473at 543.377 kb on + strand, within PfGW456L13_473at 543.378 kb on - strand, within PfGW456L13_473at 543.439 kb on + strandat 543.439 kb on + strand, within PfGW456L13_473at 543.439 kb on + strand, within PfGW456L13_473at 543.440 kb on - strandat 543.440 kb on - strandat 543.508 kb on + strandat 543.508 kb on + strandat 543.508 kb on + strandat 543.509 kb on - strandat 543.536 kb on - strandat 543.651 kb on + strandat 543.651 kb on + strandat 543.651 kb on + strandat 543.696 kb on + strandat 543.714 kb on + strandat 543.715 kb on - strandat 543.715 kb on - strandat 543.715 kb on - strandat 543.736 kb on + strandat 543.736 kb on + strandat 543.737 kb on - strandat 543.795 kb on + strand, within PfGW456L13_474at 544.511 kb on + strand, within PfGW456L13_474at 544.511 kb on + strand, within PfGW456L13_474at 544.511 kb on + strand, within PfGW456L13_474at 544.511 kb on + strand, within PfGW456L13_474at 544.512 kb on - strand, within PfGW456L13_474at 544.512 kb on - strand, within PfGW456L13_474at 544.512 kb on - strand, within PfGW456L13_474at 544.512 kb on - strand, within PfGW456L13_474

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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541,632 + PfGW456L13_472 0.64 -0.1
541,632 + PfGW456L13_472 0.64 +0.6
541,632 + PfGW456L13_472 0.64 -0.6
541,632 + PfGW456L13_472 0.64 +0.4
541,633 - PfGW456L13_472 0.64 +0.9
541,671 + PfGW456L13_472 0.66 +0.3
541,872 + PfGW456L13_472 0.74 -1.1
541,872 + PfGW456L13_472 0.74 -0.8
541,873 - PfGW456L13_472 0.74 -0.9
541,873 - PfGW456L13_472 0.74 +0.1
541,873 - PfGW456L13_472 0.74 +0.3
541,873 - PfGW456L13_472 0.74 -2.7
542,031 - PfGW456L13_472 0.81 +1.6
542,055 + PfGW456L13_472 0.82 -0.1
542,070 + PfGW456L13_472 0.83 +0.8
542,070 + PfGW456L13_472 0.83 -0.4
542,070 + PfGW456L13_472 0.83 +0.3
542,071 - PfGW456L13_472 0.83 +0.6
542,071 - PfGW456L13_472 0.83 -0.1
542,157 + PfGW456L13_472 0.86 +1.0
542,157 + PfGW456L13_472 0.86 +1.2
542,157 + PfGW456L13_472 0.86 +1.2
542,157 + PfGW456L13_472 0.86 +1.0
542,157 + PfGW456L13_472 0.86 -0.5
542,157 + PfGW456L13_472 0.86 -0.2
542,157 + PfGW456L13_472 0.86 +0.8
542,157 + PfGW456L13_472 0.86 +0.8
542,157 + PfGW456L13_472 0.86 +0.1
542,157 + PfGW456L13_472 0.86 +0.8
542,157 + PfGW456L13_472 0.86 -0.1
542,158 - PfGW456L13_472 0.86 +1.3
542,158 - PfGW456L13_472 0.86 -1.3
542,158 - PfGW456L13_472 0.86 -0.9
542,158 - PfGW456L13_472 0.86 +1.2
542,376 + -0.8
542,376 + +0.3
542,376 + +0.8
542,476 + -0.3
542,476 + -0.1
542,476 + -1.1
542,476 + +0.3
542,476 + +0.1
542,476 + -0.7
542,477 - +1.2
542,477 - +1.6
542,477 - +0.2
542,477 - +1.7
542,477 - -0.7
542,499 + +2.7
542,499 + -0.7
542,499 + +1.2
542,499 + +1.1
542,499 + +0.9
542,499 + -0.3
542,499 + -1.6
542,500 - +3.6
542,500 - -1.3
542,500 - -0.7
542,723 + PfGW456L13_473 0.12 -1.8
542,724 - PfGW456L13_473 0.12 -0.6
542,739 - PfGW456L13_473 0.14 -2.0
542,867 + PfGW456L13_473 0.28 -0.8
542,958 - PfGW456L13_473 0.38 -2.0
543,029 + PfGW456L13_473 0.45 -0.5
543,035 + PfGW456L13_473 0.46 +0.9
543,035 + PfGW456L13_473 0.46 -0.3
543,036 - PfGW456L13_473 0.46 -0.9
543,036 - PfGW456L13_473 0.46 -1.2
543,101 + PfGW456L13_473 0.53 +0.7
543,102 - PfGW456L13_473 0.53 -0.9
543,377 + PfGW456L13_473 0.83 +0.9
543,377 + PfGW456L13_473 0.83 +0.1
543,377 + PfGW456L13_473 0.83 -0.9
543,377 + PfGW456L13_473 0.83 +0.3
543,377 + PfGW456L13_473 0.83 -0.4
543,377 + PfGW456L13_473 0.83 +1.3
543,377 + PfGW456L13_473 0.83 +0.1
543,378 - PfGW456L13_473 0.83 +1.1
543,439 + +0.7
543,439 + PfGW456L13_473 0.90 -0.3
543,439 + PfGW456L13_473 0.90 +1.2
543,440 - -1.6
543,440 - +1.8
543,508 + +0.6
543,508 + +0.6
543,508 + -0.1
543,509 - +1.4
543,536 - +1.9
543,651 + +0.8
543,651 + -0.2
543,651 + -0.8
543,696 + +1.9
543,714 + -1.3
543,715 - -1.5
543,715 - -0.6
543,715 - -1.1
543,736 + -0.9
543,736 + -2.3
543,737 - -0.2
543,795 + PfGW456L13_474 0.10 +0.7
544,511 + PfGW456L13_474 0.87 -0.6
544,511 + PfGW456L13_474 0.87 -0.9
544,511 + PfGW456L13_474 0.87 +0.4
544,511 + PfGW456L13_474 0.87 +0.7
544,512 - PfGW456L13_474 0.87 +1.5
544,512 - PfGW456L13_474 0.87 +0.5
544,512 - PfGW456L13_474 0.87 -0.1
544,512 - PfGW456L13_474 0.87 +0.4

Or see this region's nucleotide sequence