Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4638 and PfGW456L13_4639 are separated by 13 nucleotides PfGW456L13_4639 and PfGW456L13_4640 are separated by 681 nucleotides PfGW456L13_4640 and PfGW456L13_4641 are separated by 107 nucleotides
PfGW456L13_4638 - Succinylglutamate desuccinylase/aspartoacylase, at 5,175,815 to 5,176,933
_4638
PfGW456L13_4639 - Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1), at 5,176,947 to 5,177,711
_4639
PfGW456L13_4640 - FIG00955308: hypothetical protein, at 5,178,393 to 5,178,602
_4640
PfGW456L13_4641 - Deoxycytidine triphosphate deaminase (EC 3.5.4.13), at 5,178,710 to 5,179,276
_4641
Position (kb)
5176
5177
5178 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5176.091 kb on + strand, within PfGW456L13_4638 at 5176.350 kb on - strand, within PfGW456L13_4638 at 5176.350 kb on - strand, within PfGW456L13_4638 at 5176.394 kb on + strand, within PfGW456L13_4638 at 5176.395 kb on - strand, within PfGW456L13_4638 at 5176.395 kb on - strand, within PfGW456L13_4638 at 5176.604 kb on + strand, within PfGW456L13_4638 at 5176.605 kb on - strand, within PfGW456L13_4638 at 5176.723 kb on - strand, within PfGW456L13_4638 at 5176.745 kb on + strand, within PfGW456L13_4638 at 5176.745 kb on + strand, within PfGW456L13_4638 at 5176.746 kb on - strand, within PfGW456L13_4638 at 5176.746 kb on - strand, within PfGW456L13_4638 at 5176.746 kb on - strand, within PfGW456L13_4638 at 5176.746 kb on - strand, within PfGW456L13_4638 at 5176.835 kb on + strand at 5176.835 kb on + strand at 5176.835 kb on + strand at 5176.835 kb on + strand at 5176.835 kb on + strand at 5176.835 kb on + strand at 5176.836 kb on - strand at 5176.836 kb on - strand at 5176.836 kb on - strand at 5176.836 kb on - strand at 5176.920 kb on + strand at 5176.920 kb on + strand at 5176.920 kb on + strand at 5176.920 kb on + strand at 5176.920 kb on + strand at 5176.920 kb on + strand at 5176.920 kb on + strand at 5176.920 kb on + strand at 5176.920 kb on + strand at 5176.920 kb on + strand at 5176.921 kb on - strand at 5176.921 kb on - strand at 5176.921 kb on - strand at 5176.921 kb on - strand at 5176.921 kb on - strand at 5176.921 kb on - strand at 5176.921 kb on - strand at 5176.950 kb on + strand at 5176.951 kb on - strand at 5176.951 kb on - strand at 5176.976 kb on + strand at 5176.976 kb on + strand at 5176.976 kb on + strand at 5176.976 kb on + strand at 5176.977 kb on - strand at 5176.977 kb on - strand at 5177.075 kb on + strand, within PfGW456L13_4639 at 5177.075 kb on + strand, within PfGW456L13_4639 at 5177.341 kb on - strand, within PfGW456L13_4639 at 5177.722 kb on + strand at 5177.722 kb on + strand at 5177.814 kb on + strand at 5177.875 kb on - strand at 5177.962 kb on + strand at 5177.962 kb on + strand at 5177.962 kb on + strand at 5177.962 kb on + strand at 5177.962 kb on + strand at 5177.962 kb on + strand at 5177.963 kb on - strand at 5177.963 kb on - strand at 5177.963 kb on - strand at 5177.963 kb on - strand at 5177.966 kb on + strand at 5177.966 kb on + strand at 5177.966 kb on + strand at 5177.967 kb on - strand at 5177.967 kb on - strand at 5177.967 kb on - strand at 5177.967 kb on - strand at 5177.992 kb on + strand at 5177.992 kb on + strand at 5177.992 kb on + strand at 5177.992 kb on + strand at 5177.992 kb on + strand at 5177.992 kb on + strand at 5177.993 kb on - strand at 5177.993 kb on - strand at 5177.998 kb on + strand at 5177.998 kb on + strand at 5177.998 kb on + strand at 5177.999 kb on - strand at 5177.999 kb on - strand at 5178.055 kb on + strand at 5178.056 kb on - strand at 5178.108 kb on + strand at 5178.109 kb on - strand at 5178.109 kb on - strand at 5178.124 kb on + strand at 5178.164 kb on + strand at 5178.175 kb on - strand at 5178.271 kb on + strand at 5178.271 kb on + strand at 5178.271 kb on + strand at 5178.271 kb on + strand at 5178.271 kb on + strand at 5178.272 kb on - strand at 5178.272 kb on - strand at 5178.272 kb on - strand at 5178.272 kb on - strand at 5178.272 kb on - strand at 5178.272 kb on - strand at 5178.272 kb on - strand at 5178.272 kb on - strand at 5178.431 kb on + strand, within PfGW456L13_4640 at 5178.431 kb on + strand, within PfGW456L13_4640 at 5178.449 kb on + strand, within PfGW456L13_4640 at 5178.449 kb on + strand, within PfGW456L13_4640 at 5178.652 kb on + strand at 5178.652 kb on + strand at 5178.652 kb on + strand at 5178.652 kb on + strand at 5178.653 kb on - strand at 5178.653 kb on - strand at 5178.653 kb on - strand at 5178.653 kb on - strand at 5178.653 kb on - strand at 5178.661 kb on + strand at 5178.661 kb on + strand at 5178.662 kb on - strand at 5178.668 kb on + strand at 5178.669 kb on - strand at 5178.669 kb on - strand at 5178.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 5,176,091 + PfGW456L13_4638 0.25 -2.1 5,176,350 - PfGW456L13_4638 0.48 -1.1 5,176,350 - PfGW456L13_4638 0.48 -0.8 5,176,394 + PfGW456L13_4638 0.52 +0.6 5,176,395 - PfGW456L13_4638 0.52 -1.4 5,176,395 - PfGW456L13_4638 0.52 -0.4 5,176,604 + PfGW456L13_4638 0.71 -0.2 5,176,605 - PfGW456L13_4638 0.71 +0.4 5,176,723 - PfGW456L13_4638 0.81 -0.2 5,176,745 + PfGW456L13_4638 0.83 -0.4 5,176,745 + PfGW456L13_4638 0.83 +0.3 5,176,746 - PfGW456L13_4638 0.83 +0.6 5,176,746 - PfGW456L13_4638 0.83 -0.9 5,176,746 - PfGW456L13_4638 0.83 -2.3 5,176,746 - PfGW456L13_4638 0.83 +0.2 5,176,835 + +0.7 5,176,835 + +0.7 5,176,835 + +0.4 5,176,835 + +1.6 5,176,835 + -0.7 5,176,835 + -0.9 5,176,836 - +0.6 5,176,836 - -0.7 5,176,836 - -1.6 5,176,836 - -1.3 5,176,920 + -1.4 5,176,920 + +0.9 5,176,920 + -0.3 5,176,920 + -0.4 5,176,920 + -0.5 5,176,920 + +0.1 5,176,920 + -0.6 5,176,920 + -2.3 5,176,920 + -1.0 5,176,920 + -0.7 5,176,921 - -1.3 5,176,921 - -0.1 5,176,921 - -1.2 5,176,921 - -1.6 5,176,921 - -0.5 5,176,921 - +1.6 5,176,921 - -1.4 5,176,950 + +0.3 5,176,951 - -1.4 5,176,951 - +0.5 5,176,976 + -1.1 5,176,976 + +0.5 5,176,976 + -0.5 5,176,976 + -0.7 5,176,977 - +1.5 5,176,977 - -1.9 5,177,075 + PfGW456L13_4639 0.17 -1.4 5,177,075 + PfGW456L13_4639 0.17 -0.9 5,177,341 - PfGW456L13_4639 0.52 -0.5 5,177,722 + -0.8 5,177,722 + +0.7 5,177,814 + -0.1 5,177,875 - +1.8 5,177,962 + -0.5 5,177,962 + +1.0 5,177,962 + +0.9 5,177,962 + +0.8 5,177,962 + +0.6 5,177,962 + -0.0 5,177,963 - -0.2 5,177,963 - +0.4 5,177,963 - +1.1 5,177,963 - -1.7 5,177,966 + -2.1 5,177,966 + +0.4 5,177,966 + -0.7 5,177,967 - +0.4 5,177,967 - -0.8 5,177,967 - +0.5 5,177,967 - +0.0 5,177,992 + +0.8 5,177,992 + +1.1 5,177,992 + +1.6 5,177,992 + +0.1 5,177,992 + +2.4 5,177,992 + +0.0 5,177,993 - +0.5 5,177,993 - -1.2 5,177,998 + -1.8 5,177,998 + -2.0 5,177,998 + +0.1 5,177,999 - +0.6 5,177,999 - +0.0 5,178,055 + +0.7 5,178,056 - +0.0 5,178,108 + +0.4 5,178,109 - +0.2 5,178,109 - +0.4 5,178,124 + -0.1 5,178,164 + +0.4 5,178,175 - -0.6 5,178,271 + +1.3 5,178,271 + +0.7 5,178,271 + -0.2 5,178,271 + +0.6 5,178,271 + -0.7 5,178,272 - -0.8 5,178,272 - -0.7 5,178,272 - -1.0 5,178,272 - -0.4 5,178,272 - +1.8 5,178,272 - -0.3 5,178,272 - +0.4 5,178,272 - -0.0 5,178,431 + PfGW456L13_4640 0.18 +1.2 5,178,431 + PfGW456L13_4640 0.18 -0.9 5,178,449 + PfGW456L13_4640 0.27 +0.4 5,178,449 + PfGW456L13_4640 0.27 -0.2 5,178,652 + +0.0 5,178,652 + +0.8 5,178,652 + +0.4 5,178,652 + -1.6 5,178,653 - -0.5 5,178,653 - +1.3 5,178,653 - +1.3 5,178,653 - +0.6 5,178,653 - -0.3 5,178,661 + -0.3 5,178,661 + -0.1 5,178,662 - +0.0 5,178,668 + -0.7 5,178,669 - +0.6 5,178,669 - +2.4 5,178,669 - +0.6
Or see this region's nucleotide sequence