Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4639

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4638 and PfGW456L13_4639 are separated by 13 nucleotidesPfGW456L13_4639 and PfGW456L13_4640 are separated by 681 nucleotidesPfGW456L13_4640 and PfGW456L13_4641 are separated by 107 nucleotides PfGW456L13_4638 - Succinylglutamate desuccinylase/aspartoacylase, at 5,175,815 to 5,176,933 _4638 PfGW456L13_4639 - Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1), at 5,176,947 to 5,177,711 _4639 PfGW456L13_4640 - FIG00955308: hypothetical protein, at 5,178,393 to 5,178,602 _4640 PfGW456L13_4641 - Deoxycytidine triphosphate deaminase (EC 3.5.4.13), at 5,178,710 to 5,179,276 _4641 Position (kb) 5176 5177 5178Strain fitness (log2 ratio) -2 -1 0 1 2at 5176.091 kb on + strand, within PfGW456L13_4638at 5176.350 kb on - strand, within PfGW456L13_4638at 5176.350 kb on - strand, within PfGW456L13_4638at 5176.394 kb on + strand, within PfGW456L13_4638at 5176.395 kb on - strand, within PfGW456L13_4638at 5176.395 kb on - strand, within PfGW456L13_4638at 5176.604 kb on + strand, within PfGW456L13_4638at 5176.605 kb on - strand, within PfGW456L13_4638at 5176.723 kb on - strand, within PfGW456L13_4638at 5176.745 kb on + strand, within PfGW456L13_4638at 5176.745 kb on + strand, within PfGW456L13_4638at 5176.746 kb on - strand, within PfGW456L13_4638at 5176.746 kb on - strand, within PfGW456L13_4638at 5176.746 kb on - strand, within PfGW456L13_4638at 5176.746 kb on - strand, within PfGW456L13_4638at 5176.835 kb on + strandat 5176.835 kb on + strandat 5176.835 kb on + strandat 5176.835 kb on + strandat 5176.835 kb on + strandat 5176.835 kb on + strandat 5176.836 kb on - strandat 5176.836 kb on - strandat 5176.836 kb on - strandat 5176.836 kb on - strandat 5176.920 kb on + strandat 5176.920 kb on + strandat 5176.920 kb on + strandat 5176.920 kb on + strandat 5176.920 kb on + strandat 5176.920 kb on + strandat 5176.920 kb on + strandat 5176.920 kb on + strandat 5176.920 kb on + strandat 5176.920 kb on + strandat 5176.921 kb on - strandat 5176.921 kb on - strandat 5176.921 kb on - strandat 5176.921 kb on - strandat 5176.921 kb on - strandat 5176.921 kb on - strandat 5176.921 kb on - strandat 5176.950 kb on + strandat 5176.951 kb on - strandat 5176.951 kb on - strandat 5176.976 kb on + strandat 5176.976 kb on + strandat 5176.976 kb on + strandat 5176.976 kb on + strandat 5176.977 kb on - strandat 5176.977 kb on - strandat 5177.075 kb on + strand, within PfGW456L13_4639at 5177.075 kb on + strand, within PfGW456L13_4639at 5177.341 kb on - strand, within PfGW456L13_4639at 5177.722 kb on + strandat 5177.722 kb on + strandat 5177.814 kb on + strandat 5177.875 kb on - strandat 5177.962 kb on + strandat 5177.962 kb on + strandat 5177.962 kb on + strandat 5177.962 kb on + strandat 5177.962 kb on + strandat 5177.962 kb on + strandat 5177.963 kb on - strandat 5177.963 kb on - strandat 5177.963 kb on - strandat 5177.963 kb on - strandat 5177.966 kb on + strandat 5177.966 kb on + strandat 5177.966 kb on + strandat 5177.967 kb on - strandat 5177.967 kb on - strandat 5177.967 kb on - strandat 5177.967 kb on - strandat 5177.992 kb on + strandat 5177.992 kb on + strandat 5177.992 kb on + strandat 5177.992 kb on + strandat 5177.992 kb on + strandat 5177.992 kb on + strandat 5177.993 kb on - strandat 5177.993 kb on - strandat 5177.998 kb on + strandat 5177.998 kb on + strandat 5177.998 kb on + strandat 5177.999 kb on - strandat 5177.999 kb on - strandat 5178.055 kb on + strandat 5178.056 kb on - strandat 5178.108 kb on + strandat 5178.109 kb on - strandat 5178.109 kb on - strandat 5178.124 kb on + strandat 5178.164 kb on + strandat 5178.175 kb on - strandat 5178.271 kb on + strandat 5178.271 kb on + strandat 5178.271 kb on + strandat 5178.271 kb on + strandat 5178.271 kb on + strandat 5178.272 kb on - strandat 5178.272 kb on - strandat 5178.272 kb on - strandat 5178.272 kb on - strandat 5178.272 kb on - strandat 5178.272 kb on - strandat 5178.272 kb on - strandat 5178.272 kb on - strandat 5178.431 kb on + strand, within PfGW456L13_4640at 5178.431 kb on + strand, within PfGW456L13_4640at 5178.449 kb on + strand, within PfGW456L13_4640at 5178.449 kb on + strand, within PfGW456L13_4640at 5178.652 kb on + strandat 5178.652 kb on + strandat 5178.652 kb on + strandat 5178.652 kb on + strandat 5178.653 kb on - strandat 5178.653 kb on - strandat 5178.653 kb on - strandat 5178.653 kb on - strandat 5178.653 kb on - strandat 5178.661 kb on + strandat 5178.661 kb on + strandat 5178.662 kb on - strandat 5178.668 kb on + strandat 5178.669 kb on - strandat 5178.669 kb on - strandat 5178.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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5,176,091 + PfGW456L13_4638 0.25 -2.1
5,176,350 - PfGW456L13_4638 0.48 -1.1
5,176,350 - PfGW456L13_4638 0.48 -0.8
5,176,394 + PfGW456L13_4638 0.52 +0.6
5,176,395 - PfGW456L13_4638 0.52 -1.4
5,176,395 - PfGW456L13_4638 0.52 -0.4
5,176,604 + PfGW456L13_4638 0.71 -0.2
5,176,605 - PfGW456L13_4638 0.71 +0.4
5,176,723 - PfGW456L13_4638 0.81 -0.2
5,176,745 + PfGW456L13_4638 0.83 -0.4
5,176,745 + PfGW456L13_4638 0.83 +0.3
5,176,746 - PfGW456L13_4638 0.83 +0.6
5,176,746 - PfGW456L13_4638 0.83 -0.9
5,176,746 - PfGW456L13_4638 0.83 -2.3
5,176,746 - PfGW456L13_4638 0.83 +0.2
5,176,835 + +0.7
5,176,835 + +0.7
5,176,835 + +0.4
5,176,835 + +1.6
5,176,835 + -0.7
5,176,835 + -0.9
5,176,836 - +0.6
5,176,836 - -0.7
5,176,836 - -1.6
5,176,836 - -1.3
5,176,920 + -1.4
5,176,920 + +0.9
5,176,920 + -0.3
5,176,920 + -0.4
5,176,920 + -0.5
5,176,920 + +0.1
5,176,920 + -0.6
5,176,920 + -2.3
5,176,920 + -1.0
5,176,920 + -0.7
5,176,921 - -1.3
5,176,921 - -0.1
5,176,921 - -1.2
5,176,921 - -1.6
5,176,921 - -0.5
5,176,921 - +1.6
5,176,921 - -1.4
5,176,950 + +0.3
5,176,951 - -1.4
5,176,951 - +0.5
5,176,976 + -1.1
5,176,976 + +0.5
5,176,976 + -0.5
5,176,976 + -0.7
5,176,977 - +1.5
5,176,977 - -1.9
5,177,075 + PfGW456L13_4639 0.17 -1.4
5,177,075 + PfGW456L13_4639 0.17 -0.9
5,177,341 - PfGW456L13_4639 0.52 -0.5
5,177,722 + -0.8
5,177,722 + +0.7
5,177,814 + -0.1
5,177,875 - +1.8
5,177,962 + -0.5
5,177,962 + +1.0
5,177,962 + +0.9
5,177,962 + +0.8
5,177,962 + +0.6
5,177,962 + -0.0
5,177,963 - -0.2
5,177,963 - +0.4
5,177,963 - +1.1
5,177,963 - -1.7
5,177,966 + -2.1
5,177,966 + +0.4
5,177,966 + -0.7
5,177,967 - +0.4
5,177,967 - -0.8
5,177,967 - +0.5
5,177,967 - +0.0
5,177,992 + +0.8
5,177,992 + +1.1
5,177,992 + +1.6
5,177,992 + +0.1
5,177,992 + +2.4
5,177,992 + +0.0
5,177,993 - +0.5
5,177,993 - -1.2
5,177,998 + -1.8
5,177,998 + -2.0
5,177,998 + +0.1
5,177,999 - +0.6
5,177,999 - +0.0
5,178,055 + +0.7
5,178,056 - +0.0
5,178,108 + +0.4
5,178,109 - +0.2
5,178,109 - +0.4
5,178,124 + -0.1
5,178,164 + +0.4
5,178,175 - -0.6
5,178,271 + +1.3
5,178,271 + +0.7
5,178,271 + -0.2
5,178,271 + +0.6
5,178,271 + -0.7
5,178,272 - -0.8
5,178,272 - -0.7
5,178,272 - -1.0
5,178,272 - -0.4
5,178,272 - +1.8
5,178,272 - -0.3
5,178,272 - +0.4
5,178,272 - -0.0
5,178,431 + PfGW456L13_4640 0.18 +1.2
5,178,431 + PfGW456L13_4640 0.18 -0.9
5,178,449 + PfGW456L13_4640 0.27 +0.4
5,178,449 + PfGW456L13_4640 0.27 -0.2
5,178,652 + +0.0
5,178,652 + +0.8
5,178,652 + +0.4
5,178,652 + -1.6
5,178,653 - -0.5
5,178,653 - +1.3
5,178,653 - +1.3
5,178,653 - +0.6
5,178,653 - -0.3
5,178,661 + -0.3
5,178,661 + -0.1
5,178,662 - +0.0
5,178,668 + -0.7
5,178,669 - +0.6
5,178,669 - +2.4
5,178,669 - +0.6

Or see this region's nucleotide sequence