Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4186

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4185 and PfGW456L13_4186 are separated by 63 nucleotidesPfGW456L13_4186 and PfGW456L13_4187 overlap by 15 nucleotides PfGW456L13_4185 - Xanthine permease, at 4,696,810 to 4,698,168 _4185 PfGW456L13_4186 - hypothetical protein, at 4,698,232 to 4,698,351 _4186 PfGW456L13_4187 - Nucleoside-binding outer membrane protein, at 4,698,337 to 4,699,122 _4187 Position (kb) 4698 4699Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4697.335 kb on + strand, within PfGW456L13_4185at 4697.357 kb on + strand, within PfGW456L13_4185at 4697.357 kb on + strand, within PfGW456L13_4185at 4697.409 kb on + strand, within PfGW456L13_4185at 4697.410 kb on - strand, within PfGW456L13_4185at 4697.440 kb on + strand, within PfGW456L13_4185at 4697.440 kb on + strand, within PfGW456L13_4185at 4697.440 kb on + strand, within PfGW456L13_4185at 4697.440 kb on + strand, within PfGW456L13_4185at 4697.441 kb on - strand, within PfGW456L13_4185at 4697.441 kb on - strand, within PfGW456L13_4185at 4697.441 kb on - strand, within PfGW456L13_4185at 4697.441 kb on - strand, within PfGW456L13_4185at 4697.441 kb on - strand, within PfGW456L13_4185at 4697.577 kb on - strand, within PfGW456L13_4185at 4697.577 kb on - strand, within PfGW456L13_4185at 4697.753 kb on + strand, within PfGW456L13_4185at 4697.754 kb on - strand, within PfGW456L13_4185at 4697.867 kb on + strand, within PfGW456L13_4185at 4698.005 kb on + strand, within PfGW456L13_4185at 4698.006 kb on - strand, within PfGW456L13_4185at 4698.006 kb on - strand, within PfGW456L13_4185at 4698.167 kb on - strandat 4698.191 kb on + strandat 4698.192 kb on - strandat 4698.241 kb on + strandat 4698.242 kb on - strandat 4698.250 kb on + strand, within PfGW456L13_4186at 4698.439 kb on + strandat 4698.439 kb on + strand, within PfGW456L13_4187at 4698.439 kb on + strand, within PfGW456L13_4187at 4698.439 kb on + strand, within PfGW456L13_4187at 4698.439 kb on + strand, within PfGW456L13_4187at 4698.439 kb on + strand, within PfGW456L13_4187at 4698.439 kb on + strand, within PfGW456L13_4187at 4698.440 kb on - strand, within PfGW456L13_4187at 4698.440 kb on - strand, within PfGW456L13_4187at 4698.440 kb on - strand, within PfGW456L13_4187at 4698.440 kb on - strand, within PfGW456L13_4187at 4698.440 kb on - strand, within PfGW456L13_4187at 4698.440 kb on - strand, within PfGW456L13_4187at 4698.440 kb on - strand, within PfGW456L13_4187at 4698.440 kb on - strand, within PfGW456L13_4187at 4698.440 kb on - strand, within PfGW456L13_4187at 4698.440 kb on - strand, within PfGW456L13_4187at 4698.440 kb on - strand, within PfGW456L13_4187at 4698.440 kb on - strand, within PfGW456L13_4187at 4698.440 kb on - strand, within PfGW456L13_4187at 4698.445 kb on + strand, within PfGW456L13_4187at 4698.445 kb on + strand, within PfGW456L13_4187at 4698.446 kb on - strand, within PfGW456L13_4187at 4698.550 kb on + strand, within PfGW456L13_4187at 4698.550 kb on + strand, within PfGW456L13_4187at 4698.550 kb on + strand, within PfGW456L13_4187at 4698.550 kb on + strand, within PfGW456L13_4187at 4698.551 kb on - strand, within PfGW456L13_4187at 4698.551 kb on - strand, within PfGW456L13_4187at 4698.551 kb on - strand, within PfGW456L13_4187at 4698.553 kb on + strand, within PfGW456L13_4187at 4698.553 kb on + strand, within PfGW456L13_4187at 4698.553 kb on + strand, within PfGW456L13_4187at 4698.553 kb on + strand, within PfGW456L13_4187at 4698.553 kb on + strand, within PfGW456L13_4187at 4698.553 kb on + strand, within PfGW456L13_4187at 4698.554 kb on - strand, within PfGW456L13_4187at 4698.554 kb on - strand, within PfGW456L13_4187at 4698.554 kb on - strand, within PfGW456L13_4187at 4698.554 kb on - strand, within PfGW456L13_4187at 4698.554 kb on - strand, within PfGW456L13_4187at 4698.554 kb on - strand, within PfGW456L13_4187at 4698.554 kb on - strand, within PfGW456L13_4187at 4698.554 kb on - strand, within PfGW456L13_4187at 4698.592 kb on + strand, within PfGW456L13_4187at 4698.592 kb on + strand, within PfGW456L13_4187at 4698.592 kb on + strand, within PfGW456L13_4187at 4698.593 kb on - strand, within PfGW456L13_4187at 4698.593 kb on - strand, within PfGW456L13_4187at 4698.595 kb on + strand, within PfGW456L13_4187at 4698.688 kb on + strand, within PfGW456L13_4187at 4698.688 kb on + strand, within PfGW456L13_4187at 4698.689 kb on - strand, within PfGW456L13_4187at 4698.689 kb on - strand, within PfGW456L13_4187at 4698.689 kb on - strand, within PfGW456L13_4187at 4698.719 kb on - strand, within PfGW456L13_4187at 4698.781 kb on + strand, within PfGW456L13_4187at 4698.781 kb on + strand, within PfGW456L13_4187at 4698.781 kb on + strand, within PfGW456L13_4187at 4698.781 kb on + strand, within PfGW456L13_4187at 4698.782 kb on - strand, within PfGW456L13_4187at 4698.782 kb on - strand, within PfGW456L13_4187at 4698.782 kb on - strand, within PfGW456L13_4187at 4698.782 kb on - strand, within PfGW456L13_4187at 4698.782 kb on - strand, within PfGW456L13_4187at 4698.782 kb on - strand, within PfGW456L13_4187at 4698.847 kb on + strand, within PfGW456L13_4187at 4698.847 kb on + strand, within PfGW456L13_4187at 4698.847 kb on + strand, within PfGW456L13_4187at 4698.848 kb on - strand, within PfGW456L13_4187at 4698.848 kb on - strand, within PfGW456L13_4187at 4698.848 kb on - strand, within PfGW456L13_4187at 4698.848 kb on - strand, within PfGW456L13_4187at 4698.848 kb on - strand, within PfGW456L13_4187at 4698.848 kb on - strand, within PfGW456L13_4187at 4698.848 kb on - strand, within PfGW456L13_4187at 4698.848 kb on - strand, within PfGW456L13_4187at 4698.889 kb on + strand, within PfGW456L13_4187at 4698.889 kb on + strand, within PfGW456L13_4187at 4698.889 kb on + strand, within PfGW456L13_4187at 4698.890 kb on - strand, within PfGW456L13_4187at 4698.934 kb on + strand, within PfGW456L13_4187at 4698.934 kb on + strand, within PfGW456L13_4187at 4698.934 kb on + strand, within PfGW456L13_4187at 4698.934 kb on + strand, within PfGW456L13_4187at 4698.935 kb on - strand, within PfGW456L13_4187at 4698.935 kb on - strand, within PfGW456L13_4187at 4698.935 kb on - strand, within PfGW456L13_4187at 4698.935 kb on - strand, within PfGW456L13_4187at 4698.935 kb on - strand, within PfGW456L13_4187at 4698.935 kb on - strand, within PfGW456L13_4187at 4698.935 kb on - strand, within PfGW456L13_4187at 4698.935 kb on - strand, within PfGW456L13_4187at 4698.970 kb on + strand, within PfGW456L13_4187at 4698.970 kb on + strand, within PfGW456L13_4187at 4698.970 kb on + strand, within PfGW456L13_4187at 4698.970 kb on + strand, within PfGW456L13_4187at 4698.970 kb on + strand, within PfGW456L13_4187at 4698.970 kb on + strand, within PfGW456L13_4187at 4698.971 kb on - strand, within PfGW456L13_4187at 4699.012 kb on + strand, within PfGW456L13_4187at 4699.012 kb on + strand, within PfGW456L13_4187at 4699.012 kb on + strand, within PfGW456L13_4187at 4699.012 kb on + strand, within PfGW456L13_4187at 4699.012 kb on + strand, within PfGW456L13_4187at 4699.012 kb on + strand, within PfGW456L13_4187at 4699.012 kb on + strand, within PfGW456L13_4187at 4699.012 kb on + strand, within PfGW456L13_4187at 4699.012 kb on + strand, within PfGW456L13_4187at 4699.012 kb on + strand, within PfGW456L13_4187at 4699.012 kb on + strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.013 kb on - strand, within PfGW456L13_4187at 4699.027 kb on + strand, within PfGW456L13_4187at 4699.027 kb on + strand, within PfGW456L13_4187at 4699.027 kb on + strand, within PfGW456L13_4187at 4699.027 kb on + strand, within PfGW456L13_4187at 4699.028 kb on - strand, within PfGW456L13_4187at 4699.028 kb on - strand, within PfGW456L13_4187at 4699.028 kb on - strand, within PfGW456L13_4187at 4699.028 kb on - strand, within PfGW456L13_4187at 4699.034 kb on - strand, within PfGW456L13_4187at 4699.034 kb on - strand, within PfGW456L13_4187at 4699.048 kb on + strandat 4699.049 kb on - strandat 4699.049 kb on - strandat 4699.049 kb on - strandat 4699.106 kb on + strandat 4699.106 kb on + strandat 4699.200 kb on + strandat 4699.200 kb on + strandat 4699.200 kb on + strandat 4699.200 kb on + strandat 4699.246 kb on + strandat 4699.246 kb on + strandat 4699.247 kb on - strandat 4699.270 kb on + strandat 4699.270 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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4,697,335 + PfGW456L13_4185 0.39 +0.6
4,697,357 + PfGW456L13_4185 0.40 -0.2
4,697,357 + PfGW456L13_4185 0.40 +0.0
4,697,409 + PfGW456L13_4185 0.44 -0.1
4,697,410 - PfGW456L13_4185 0.44 -0.2
4,697,440 + PfGW456L13_4185 0.46 -0.0
4,697,440 + PfGW456L13_4185 0.46 -0.6
4,697,440 + PfGW456L13_4185 0.46 +1.0
4,697,440 + PfGW456L13_4185 0.46 -0.4
4,697,441 - PfGW456L13_4185 0.46 -0.5
4,697,441 - PfGW456L13_4185 0.46 -0.1
4,697,441 - PfGW456L13_4185 0.46 -0.0
4,697,441 - PfGW456L13_4185 0.46 -0.2
4,697,441 - PfGW456L13_4185 0.46 -0.9
4,697,577 - PfGW456L13_4185 0.56 +0.5
4,697,577 - PfGW456L13_4185 0.56 -1.4
4,697,753 + PfGW456L13_4185 0.69 +0.0
4,697,754 - PfGW456L13_4185 0.69 +0.6
4,697,867 + PfGW456L13_4185 0.78 -0.3
4,698,005 + PfGW456L13_4185 0.88 +0.9
4,698,006 - PfGW456L13_4185 0.88 +0.0
4,698,006 - PfGW456L13_4185 0.88 -0.7
4,698,167 - -0.2
4,698,191 + -0.4
4,698,192 - +0.7
4,698,241 + -0.8
4,698,242 - +0.6
4,698,250 + PfGW456L13_4186 0.15 -0.5
4,698,439 + +1.6
4,698,439 + PfGW456L13_4187 0.13 +0.7
4,698,439 + PfGW456L13_4187 0.13 +0.2
4,698,439 + PfGW456L13_4187 0.13 -0.2
4,698,439 + PfGW456L13_4187 0.13 +0.9
4,698,439 + PfGW456L13_4187 0.13 +0.8
4,698,439 + PfGW456L13_4187 0.13 +0.4
4,698,440 - PfGW456L13_4187 0.13 +1.2
4,698,440 - PfGW456L13_4187 0.13 -0.4
4,698,440 - PfGW456L13_4187 0.13 +0.4
4,698,440 - PfGW456L13_4187 0.13 -0.4
4,698,440 - PfGW456L13_4187 0.13 +0.9
4,698,440 - PfGW456L13_4187 0.13 +1.2
4,698,440 - PfGW456L13_4187 0.13 +0.1
4,698,440 - PfGW456L13_4187 0.13 -0.0
4,698,440 - PfGW456L13_4187 0.13 -1.0
4,698,440 - PfGW456L13_4187 0.13 -0.3
4,698,440 - PfGW456L13_4187 0.13 -0.5
4,698,440 - PfGW456L13_4187 0.13 -0.6
4,698,440 - PfGW456L13_4187 0.13 -0.5
4,698,445 + PfGW456L13_4187 0.14 -1.1
4,698,445 + PfGW456L13_4187 0.14 -1.0
4,698,446 - PfGW456L13_4187 0.14 +1.0
4,698,550 + PfGW456L13_4187 0.27 +1.4
4,698,550 + PfGW456L13_4187 0.27 +1.4
4,698,550 + PfGW456L13_4187 0.27 +0.0
4,698,550 + PfGW456L13_4187 0.27 -1.1
4,698,551 - PfGW456L13_4187 0.27 -1.0
4,698,551 - PfGW456L13_4187 0.27 +1.4
4,698,551 - PfGW456L13_4187 0.27 +0.8
4,698,553 + PfGW456L13_4187 0.27 -0.4
4,698,553 + PfGW456L13_4187 0.27 +1.2
4,698,553 + PfGW456L13_4187 0.27 -0.5
4,698,553 + PfGW456L13_4187 0.27 -0.9
4,698,553 + PfGW456L13_4187 0.27 -1.0
4,698,553 + PfGW456L13_4187 0.27 -0.4
4,698,554 - PfGW456L13_4187 0.28 -0.8
4,698,554 - PfGW456L13_4187 0.28 +0.5
4,698,554 - PfGW456L13_4187 0.28 +0.7
4,698,554 - PfGW456L13_4187 0.28 +1.6
4,698,554 - PfGW456L13_4187 0.28 -0.5
4,698,554 - PfGW456L13_4187 0.28 -1.1
4,698,554 - PfGW456L13_4187 0.28 -0.8
4,698,554 - PfGW456L13_4187 0.28 +1.1
4,698,592 + PfGW456L13_4187 0.32 -0.6
4,698,592 + PfGW456L13_4187 0.32 -0.3
4,698,592 + PfGW456L13_4187 0.32 +0.3
4,698,593 - PfGW456L13_4187 0.33 +2.9
4,698,593 - PfGW456L13_4187 0.33 +0.7
4,698,595 + PfGW456L13_4187 0.33 +1.6
4,698,688 + PfGW456L13_4187 0.45 -0.5
4,698,688 + PfGW456L13_4187 0.45 +1.3
4,698,689 - PfGW456L13_4187 0.45 -0.3
4,698,689 - PfGW456L13_4187 0.45 -1.3
4,698,689 - PfGW456L13_4187 0.45 +0.8
4,698,719 - PfGW456L13_4187 0.49 +0.1
4,698,781 + PfGW456L13_4187 0.56 -0.5
4,698,781 + PfGW456L13_4187 0.56 +0.3
4,698,781 + PfGW456L13_4187 0.56 +0.4
4,698,781 + PfGW456L13_4187 0.56 -0.6
4,698,782 - PfGW456L13_4187 0.57 -0.2
4,698,782 - PfGW456L13_4187 0.57 +0.5
4,698,782 - PfGW456L13_4187 0.57 -0.6
4,698,782 - PfGW456L13_4187 0.57 +0.2
4,698,782 - PfGW456L13_4187 0.57 +0.5
4,698,782 - PfGW456L13_4187 0.57 -0.4
4,698,847 + PfGW456L13_4187 0.65 -0.1
4,698,847 + PfGW456L13_4187 0.65 -1.4
4,698,847 + PfGW456L13_4187 0.65 -0.6
4,698,848 - PfGW456L13_4187 0.65 -0.2
4,698,848 - PfGW456L13_4187 0.65 -0.1
4,698,848 - PfGW456L13_4187 0.65 +0.7
4,698,848 - PfGW456L13_4187 0.65 -0.5
4,698,848 - PfGW456L13_4187 0.65 -1.2
4,698,848 - PfGW456L13_4187 0.65 -0.5
4,698,848 - PfGW456L13_4187 0.65 +0.5
4,698,848 - PfGW456L13_4187 0.65 +0.2
4,698,889 + PfGW456L13_4187 0.70 +1.0
4,698,889 + PfGW456L13_4187 0.70 -0.6
4,698,889 + PfGW456L13_4187 0.70 +0.5
4,698,890 - PfGW456L13_4187 0.70 -1.2
4,698,934 + PfGW456L13_4187 0.76 -2.1
4,698,934 + PfGW456L13_4187 0.76 +0.7
4,698,934 + PfGW456L13_4187 0.76 -1.2
4,698,934 + PfGW456L13_4187 0.76 +0.9
4,698,935 - PfGW456L13_4187 0.76 -0.7
4,698,935 - PfGW456L13_4187 0.76 -1.5
4,698,935 - PfGW456L13_4187 0.76 +1.7
4,698,935 - PfGW456L13_4187 0.76 +0.2
4,698,935 - PfGW456L13_4187 0.76 -0.4
4,698,935 - PfGW456L13_4187 0.76 +0.6
4,698,935 - PfGW456L13_4187 0.76 -0.6
4,698,935 - PfGW456L13_4187 0.76 +0.6
4,698,970 + PfGW456L13_4187 0.81 +0.8
4,698,970 + PfGW456L13_4187 0.81 -1.8
4,698,970 + PfGW456L13_4187 0.81 -0.1
4,698,970 + PfGW456L13_4187 0.81 -0.1
4,698,970 + PfGW456L13_4187 0.81 -0.3
4,698,970 + PfGW456L13_4187 0.81 +0.1
4,698,971 - PfGW456L13_4187 0.81 -1.0
4,699,012 + PfGW456L13_4187 0.86 -0.5
4,699,012 + PfGW456L13_4187 0.86 +0.6
4,699,012 + PfGW456L13_4187 0.86 +0.3
4,699,012 + PfGW456L13_4187 0.86 +0.0
4,699,012 + PfGW456L13_4187 0.86 +0.2
4,699,012 + PfGW456L13_4187 0.86 -2.0
4,699,012 + PfGW456L13_4187 0.86 +1.0
4,699,012 + PfGW456L13_4187 0.86 +0.8
4,699,012 + PfGW456L13_4187 0.86 +0.0
4,699,012 + PfGW456L13_4187 0.86 -0.6
4,699,012 + PfGW456L13_4187 0.86 -1.7
4,699,013 - PfGW456L13_4187 0.86 +1.0
4,699,013 - PfGW456L13_4187 0.86 -0.5
4,699,013 - PfGW456L13_4187 0.86 -0.2
4,699,013 - PfGW456L13_4187 0.86 -0.3
4,699,013 - PfGW456L13_4187 0.86 -0.3
4,699,013 - PfGW456L13_4187 0.86 +0.6
4,699,013 - PfGW456L13_4187 0.86 +0.7
4,699,013 - PfGW456L13_4187 0.86 -1.6
4,699,013 - PfGW456L13_4187 0.86 +1.6
4,699,013 - PfGW456L13_4187 0.86 -0.5
4,699,013 - PfGW456L13_4187 0.86 -0.4
4,699,013 - PfGW456L13_4187 0.86 +0.2
4,699,013 - PfGW456L13_4187 0.86 -0.4
4,699,013 - PfGW456L13_4187 0.86 +0.4
4,699,013 - PfGW456L13_4187 0.86 +0.8
4,699,013 - PfGW456L13_4187 0.86 -0.1
4,699,013 - PfGW456L13_4187 0.86 -0.8
4,699,013 - PfGW456L13_4187 0.86 +1.1
4,699,027 + PfGW456L13_4187 0.88 -0.8
4,699,027 + PfGW456L13_4187 0.88 +0.6
4,699,027 + PfGW456L13_4187 0.88 +0.7
4,699,027 + PfGW456L13_4187 0.88 +0.0
4,699,028 - PfGW456L13_4187 0.88 -1.1
4,699,028 - PfGW456L13_4187 0.88 -0.7
4,699,028 - PfGW456L13_4187 0.88 -0.5
4,699,028 - PfGW456L13_4187 0.88 +1.0
4,699,034 - PfGW456L13_4187 0.89 -0.7
4,699,034 - PfGW456L13_4187 0.89 +0.0
4,699,048 + -0.6
4,699,049 - +0.6
4,699,049 - +0.6
4,699,049 - -0.3
4,699,106 + +0.9
4,699,106 + -1.4
4,699,200 + -1.1
4,699,200 + +0.9
4,699,200 + -0.1
4,699,200 + -0.0
4,699,246 + -1.0
4,699,246 + -0.1
4,699,247 - -0.2
4,699,270 + -0.7
4,699,270 + +0.9

Or see this region's nucleotide sequence