Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4033

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4031 and PfGW456L13_4032 overlap by 18 nucleotidesPfGW456L13_4032 and PfGW456L13_4033 are separated by 38 nucleotidesPfGW456L13_4033 and PfGW456L13_4034 are separated by 229 nucleotidesPfGW456L13_4034 and PfGW456L13_4035 are separated by 10 nucleotides PfGW456L13_4031 - Beta N-acetyl-glucosaminidase (EC 3.2.1.52), at 4,524,892 to 4,525,902 _4031 PfGW456L13_4032 - hypothetical protein, at 4,525,885 to 4,526,022 _4032 PfGW456L13_4033 - Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family, at 4,526,061 to 4,526,768 _4033 PfGW456L13_4034 - SOS-response repressor and protease LexA (EC 3.4.21.88), at 4,526,998 to 4,527,606 _4034 PfGW456L13_4035 - Cell division inhibitor-related protein, at 4,527,617 to 4,528,093 _4035 Position (kb) 4526 4527Strain fitness (log2 ratio) -1 0 1 2 3at 4525.257 kb on - strand, within PfGW456L13_4031at 4525.616 kb on + strand, within PfGW456L13_4031at 4525.617 kb on - strand, within PfGW456L13_4031at 4525.903 kb on - strand, within PfGW456L13_4032at 4525.956 kb on + strand, within PfGW456L13_4032at 4525.957 kb on - strand, within PfGW456L13_4032at 4526.020 kb on + strandat 4526.021 kb on - strandat 4526.319 kb on - strand, within PfGW456L13_4033at 4526.319 kb on - strand, within PfGW456L13_4033at 4526.372 kb on - strand, within PfGW456L13_4033at 4526.445 kb on - strand, within PfGW456L13_4033at 4526.804 kb on - strandat 4526.866 kb on + strandat 4526.866 kb on + strandat 4526.867 kb on - strandat 4526.867 kb on - strandat 4526.867 kb on - strandat 4526.867 kb on - strandat 4526.867 kb on - strandat 4526.957 kb on - strandat 4526.958 kb on + strandat 4526.958 kb on + strandat 4526.958 kb on + strandat 4526.958 kb on + strandat 4526.960 kb on + strandat 4526.960 kb on + strandat 4526.997 kb on + strandat 4526.997 kb on + strandat 4527.002 kb on + strandat 4527.708 kb on + strand, within PfGW456L13_4035

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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4,525,257 - PfGW456L13_4031 0.36 -1.0
4,525,616 + PfGW456L13_4031 0.72 +0.4
4,525,617 - PfGW456L13_4031 0.72 +0.2
4,525,903 - PfGW456L13_4032 0.13 +1.2
4,525,956 + PfGW456L13_4032 0.51 -0.6
4,525,957 - PfGW456L13_4032 0.52 +0.7
4,526,020 + -1.2
4,526,021 - +0.8
4,526,319 - PfGW456L13_4033 0.36 +0.5
4,526,319 - PfGW456L13_4033 0.36 -0.5
4,526,372 - PfGW456L13_4033 0.44 +0.2
4,526,445 - PfGW456L13_4033 0.54 -0.3
4,526,804 - +0.1
4,526,866 + -1.4
4,526,866 + -0.5
4,526,867 - +0.5
4,526,867 - -0.1
4,526,867 - -1.0
4,526,867 - -0.4
4,526,867 - +0.3
4,526,957 - +0.4
4,526,958 + +3.5
4,526,958 + -0.6
4,526,958 + -1.3
4,526,958 + -0.6
4,526,960 + -1.7
4,526,960 + -0.0
4,526,997 + -0.6
4,526,997 + -0.2
4,527,002 + -0.7
4,527,708 + PfGW456L13_4035 0.19 -0.4

Or see this region's nucleotide sequence