Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3953 and PfGW456L13_3954 are separated by 49 nucleotides PfGW456L13_3954 and PfGW456L13_3955 are separated by 29 nucleotides PfGW456L13_3955 and PfGW456L13_5223 are separated by 197 nucleotides PfGW456L13_5223 and PfGW456L13_5224 are separated by 83 nucleotides PfGW456L13_5224 and PfGW456L13_5225 are separated by 56 nucleotides PfGW456L13_5225 and PfGW456L13_5226 are separated by 82 nucleotides PfGW456L13_5226 and PfGW456L13_3956 are separated by 203 nucleotides
PfGW456L13_3953 - FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein, at 4,434,821 to 4,435,258
_3953
PfGW456L13_3954 - Probable hydrolase, at 4,435,308 to 4,436,141
_3954
PfGW456L13_3955 - Transcriptional regulator, TetR family, at 4,436,171 to 4,436,710
_3955
PfGW456L13_5223 - tRNA-Glu-TTC, at 4,436,908 to 4,436,980
_5223
PfGW456L13_5224 - tRNA-Ala-GGC, at 4,437,064 to 4,437,136
_5224
PfGW456L13_5225 - tRNA-Glu-TTC, at 4,437,193 to 4,437,265
_5225
PfGW456L13_5226 - tRNA-Ala-GGC, at 4,437,348 to 4,437,420
_5226
PfGW456L13_3956 - Glutamyl-tRNA synthetase (EC 6.1.1.17), at 4,437,624 to 4,439,033
_3956
Position (kb)
4436
4437 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4435.278 kb on + strand at 4435.278 kb on + strand at 4435.279 kb on - strand at 4435.299 kb on - strand at 4435.299 kb on - strand at 4435.299 kb on - strand at 4435.353 kb on + strand at 4435.353 kb on + strand at 4435.353 kb on + strand at 4435.353 kb on + strand at 4435.522 kb on + strand, within PfGW456L13_3954 at 4435.522 kb on + strand, within PfGW456L13_3954 at 4435.936 kb on - strand, within PfGW456L13_3954 at 4435.936 kb on - strand, within PfGW456L13_3954 at 4435.936 kb on - strand, within PfGW456L13_3954 at 4436.130 kb on + strand at 4436.130 kb on + strand at 4436.131 kb on - strand at 4436.442 kb on + strand, within PfGW456L13_3955 at 4436.442 kb on + strand, within PfGW456L13_3955 at 4436.442 kb on + strand, within PfGW456L13_3955 at 4436.443 kb on - strand, within PfGW456L13_3955 at 4436.443 kb on - strand, within PfGW456L13_3955 at 4436.443 kb on - strand, within PfGW456L13_3955 at 4436.443 kb on - strand, within PfGW456L13_3955 at 4436.577 kb on + strand, within PfGW456L13_3955 at 4436.578 kb on - strand, within PfGW456L13_3955 at 4436.702 kb on - strand at 4436.865 kb on - strand at 4436.882 kb on - strand at 4436.882 kb on - strand at 4436.882 kb on - strand at 4436.882 kb on - strand at 4437.129 kb on - strand at 4437.129 kb on - strand at 4437.129 kb on - strand at 4437.129 kb on - strand at 4437.129 kb on - strand at 4437.129 kb on - strand at 4437.355 kb on - strand at 4437.413 kb on - strand at 4437.413 kb on - strand at 4437.413 kb on - strand at 4437.413 kb on - strand at 4437.413 kb on - strand at 4437.413 kb on - strand at 4437.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 4,435,278 + +2.2 4,435,278 + +2.1 4,435,279 - -0.8 4,435,299 - -0.1 4,435,299 - -1.1 4,435,299 - +0.6 4,435,353 + +0.0 4,435,353 + -0.4 4,435,353 + +0.1 4,435,353 + -1.0 4,435,522 + PfGW456L13_3954 0.26 -1.4 4,435,522 + PfGW456L13_3954 0.26 +0.5 4,435,936 - PfGW456L13_3954 0.75 -0.8 4,435,936 - PfGW456L13_3954 0.75 +1.0 4,435,936 - PfGW456L13_3954 0.75 -1.2 4,436,130 + +0.9 4,436,130 + -1.3 4,436,131 - +0.9 4,436,442 + PfGW456L13_3955 0.50 -0.7 4,436,442 + PfGW456L13_3955 0.50 -1.7 4,436,442 + PfGW456L13_3955 0.50 +0.6 4,436,443 - PfGW456L13_3955 0.50 -0.7 4,436,443 - PfGW456L13_3955 0.50 -1.1 4,436,443 - PfGW456L13_3955 0.50 -1.9 4,436,443 - PfGW456L13_3955 0.50 +0.1 4,436,577 + PfGW456L13_3955 0.75 -2.0 4,436,578 - PfGW456L13_3955 0.75 -1.7 4,436,702 - +0.3 4,436,865 - +1.6 4,436,882 - -0.0 4,436,882 - -1.5 4,436,882 - -1.4 4,436,882 - +0.0 4,437,129 - -0.5 4,437,129 - -1.4 4,437,129 - +1.1 4,437,129 - -1.7 4,437,129 - -1.6 4,437,129 - -0.5 4,437,355 - -0.1 4,437,413 - +0.8 4,437,413 - -0.1 4,437,413 - +1.0 4,437,413 - -1.0 4,437,413 - +0.3 4,437,413 - +0.1 4,437,521 - -0.7
Or see this region's nucleotide sequence