Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3955

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3953 and PfGW456L13_3954 are separated by 49 nucleotidesPfGW456L13_3954 and PfGW456L13_3955 are separated by 29 nucleotidesPfGW456L13_3955 and PfGW456L13_5223 are separated by 197 nucleotidesPfGW456L13_5223 and PfGW456L13_5224 are separated by 83 nucleotidesPfGW456L13_5224 and PfGW456L13_5225 are separated by 56 nucleotidesPfGW456L13_5225 and PfGW456L13_5226 are separated by 82 nucleotidesPfGW456L13_5226 and PfGW456L13_3956 are separated by 203 nucleotides PfGW456L13_3953 - FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein, at 4,434,821 to 4,435,258 _3953 PfGW456L13_3954 - Probable hydrolase, at 4,435,308 to 4,436,141 _3954 PfGW456L13_3955 - Transcriptional regulator, TetR family, at 4,436,171 to 4,436,710 _3955 PfGW456L13_5223 - tRNA-Glu-TTC, at 4,436,908 to 4,436,980 _5223 PfGW456L13_5224 - tRNA-Ala-GGC, at 4,437,064 to 4,437,136 _5224 PfGW456L13_5225 - tRNA-Glu-TTC, at 4,437,193 to 4,437,265 _5225 PfGW456L13_5226 - tRNA-Ala-GGC, at 4,437,348 to 4,437,420 _5226 PfGW456L13_3956 - Glutamyl-tRNA synthetase (EC 6.1.1.17), at 4,437,624 to 4,439,033 _3956 Position (kb) 4436 4437Strain fitness (log2 ratio) -2 -1 0 1 2at 4435.278 kb on + strandat 4435.278 kb on + strandat 4435.279 kb on - strandat 4435.299 kb on - strandat 4435.299 kb on - strandat 4435.299 kb on - strandat 4435.353 kb on + strandat 4435.353 kb on + strandat 4435.353 kb on + strandat 4435.353 kb on + strandat 4435.522 kb on + strand, within PfGW456L13_3954at 4435.522 kb on + strand, within PfGW456L13_3954at 4435.936 kb on - strand, within PfGW456L13_3954at 4435.936 kb on - strand, within PfGW456L13_3954at 4435.936 kb on - strand, within PfGW456L13_3954at 4436.130 kb on + strandat 4436.130 kb on + strandat 4436.131 kb on - strandat 4436.442 kb on + strand, within PfGW456L13_3955at 4436.442 kb on + strand, within PfGW456L13_3955at 4436.442 kb on + strand, within PfGW456L13_3955at 4436.443 kb on - strand, within PfGW456L13_3955at 4436.443 kb on - strand, within PfGW456L13_3955at 4436.443 kb on - strand, within PfGW456L13_3955at 4436.443 kb on - strand, within PfGW456L13_3955at 4436.577 kb on + strand, within PfGW456L13_3955at 4436.578 kb on - strand, within PfGW456L13_3955at 4436.702 kb on - strandat 4436.865 kb on - strandat 4436.882 kb on - strandat 4436.882 kb on - strandat 4436.882 kb on - strandat 4436.882 kb on - strandat 4437.129 kb on - strandat 4437.129 kb on - strandat 4437.129 kb on - strandat 4437.129 kb on - strandat 4437.129 kb on - strandat 4437.129 kb on - strandat 4437.355 kb on - strandat 4437.413 kb on - strandat 4437.413 kb on - strandat 4437.413 kb on - strandat 4437.413 kb on - strandat 4437.413 kb on - strandat 4437.413 kb on - strandat 4437.521 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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4,435,278 + +2.2
4,435,278 + +2.1
4,435,279 - -0.8
4,435,299 - -0.1
4,435,299 - -1.1
4,435,299 - +0.6
4,435,353 + +0.0
4,435,353 + -0.4
4,435,353 + +0.1
4,435,353 + -1.0
4,435,522 + PfGW456L13_3954 0.26 -1.4
4,435,522 + PfGW456L13_3954 0.26 +0.5
4,435,936 - PfGW456L13_3954 0.75 -0.8
4,435,936 - PfGW456L13_3954 0.75 +1.0
4,435,936 - PfGW456L13_3954 0.75 -1.2
4,436,130 + +0.9
4,436,130 + -1.3
4,436,131 - +0.9
4,436,442 + PfGW456L13_3955 0.50 -0.7
4,436,442 + PfGW456L13_3955 0.50 -1.7
4,436,442 + PfGW456L13_3955 0.50 +0.6
4,436,443 - PfGW456L13_3955 0.50 -0.7
4,436,443 - PfGW456L13_3955 0.50 -1.1
4,436,443 - PfGW456L13_3955 0.50 -1.9
4,436,443 - PfGW456L13_3955 0.50 +0.1
4,436,577 + PfGW456L13_3955 0.75 -2.0
4,436,578 - PfGW456L13_3955 0.75 -1.7
4,436,702 - +0.3
4,436,865 - +1.6
4,436,882 - -0.0
4,436,882 - -1.5
4,436,882 - -1.4
4,436,882 - +0.0
4,437,129 - -0.5
4,437,129 - -1.4
4,437,129 - +1.1
4,437,129 - -1.7
4,437,129 - -1.6
4,437,129 - -0.5
4,437,355 - -0.1
4,437,413 - +0.8
4,437,413 - -0.1
4,437,413 - +1.0
4,437,413 - -1.0
4,437,413 - +0.3
4,437,413 - +0.1
4,437,521 - -0.7

Or see this region's nucleotide sequence