Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_302

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_301 and PfGW456L13_302 are separated by 81 nucleotidesPfGW456L13_302 and PfGW456L13_303 overlap by 8 nucleotidesPfGW456L13_303 and PfGW456L13_304 are separated by 25 nucleotidesPfGW456L13_304 and PfGW456L13_305 are separated by 10 nucleotides PfGW456L13_301 - Ubiquinone biosynthesis monooxygenase UbiB, at 351,788 to 353,392 _301 PfGW456L13_302 - Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19), at 353,474 to 353,875 _302 PfGW456L13_303 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data), at 353,868 to 354,200 _303 PfGW456L13_304 - Twin-arginine translocation protein TatA, at 354,226 to 354,498 _304 PfGW456L13_305 - Twin-arginine translocation protein TatB, at 354,509 to 354,952 _305 Position (kb) 353 354Strain fitness (log2 ratio) -2 -1 0 1 2at 353.621 kb on + strand, within PfGW456L13_302at 353.621 kb on + strand, within PfGW456L13_302at 353.622 kb on - strand, within PfGW456L13_302at 353.622 kb on - strand, within PfGW456L13_302at 353.622 kb on - strand, within PfGW456L13_302at 353.622 kb on - strand, within PfGW456L13_302at 353.622 kb on - strand, within PfGW456L13_302at 353.622 kb on - strand, within PfGW456L13_302at 353.783 kb on + strand, within PfGW456L13_302at 353.792 kb on + strand, within PfGW456L13_302at 353.793 kb on - strand, within PfGW456L13_302at 353.793 kb on - strand, within PfGW456L13_302at 353.849 kb on + strandat 353.849 kb on + strandat 353.849 kb on + strandat 353.849 kb on + strandat 353.850 kb on - strandat 353.937 kb on + strand, within PfGW456L13_303at 353.952 kb on + strand, within PfGW456L13_303at 353.952 kb on + strand, within PfGW456L13_303at 354.130 kb on + strand, within PfGW456L13_303at 354.202 kb on + strandat 354.202 kb on + strandat 354.202 kb on + strandat 354.206 kb on + strandat 354.206 kb on + strandat 354.206 kb on + strandat 354.206 kb on + strandat 354.206 kb on + strandat 354.206 kb on + strandat 354.206 kb on + strandat 354.209 kb on + strandat 354.209 kb on + strandat 354.507 kb on + strandat 354.507 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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353,621 + PfGW456L13_302 0.37 -1.8
353,621 + PfGW456L13_302 0.37 -1.3
353,622 - PfGW456L13_302 0.37 -1.8
353,622 - PfGW456L13_302 0.37 -2.5
353,622 - PfGW456L13_302 0.37 -1.8
353,622 - PfGW456L13_302 0.37 -0.5
353,622 - PfGW456L13_302 0.37 -2.4
353,622 - PfGW456L13_302 0.37 +1.1
353,783 + PfGW456L13_302 0.77 -2.5
353,792 + PfGW456L13_302 0.79 +0.2
353,793 - PfGW456L13_302 0.79 -1.5
353,793 - PfGW456L13_302 0.79 -0.4
353,849 + +0.7
353,849 + +2.2
353,849 + +0.1
353,849 + +0.3
353,850 - -0.5
353,937 + PfGW456L13_303 0.21 -0.4
353,952 + PfGW456L13_303 0.25 -1.0
353,952 + PfGW456L13_303 0.25 -0.7
354,130 + PfGW456L13_303 0.79 -1.6
354,202 + +1.2
354,202 + +1.2
354,202 + +0.0
354,206 + -1.9
354,206 + -0.1
354,206 + +1.7
354,206 + +1.5
354,206 + -0.0
354,206 + +0.5
354,206 + +1.0
354,209 + -0.3
354,209 + -0.7
354,507 + -0.0
354,507 + +0.2

Or see this region's nucleotide sequence