Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_276

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_275 and PfGW456L13_276 are separated by 151 nucleotidesPfGW456L13_276 and PfGW456L13_277 are separated by 31 nucleotides PfGW456L13_275 - 3-dehydroquinate synthase (EC 4.2.3.4), at 322,813 to 323,913 _275 PfGW456L13_276 - Shikimate kinase I (EC 2.7.1.71), at 324,065 to 324,556 _276 PfGW456L13_277 - Type IV pilus biogenesis protein PilQ, at 324,588 to 326,657 _277 Position (kb) 324 325Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 323.144 kb on + strand, within PfGW456L13_275at 323.270 kb on + strand, within PfGW456L13_275at 323.804 kb on - strandat 323.944 kb on + strandat 323.964 kb on + strandat 324.067 kb on - strandat 324.095 kb on + strandat 324.095 kb on + strandat 324.096 kb on - strandat 324.096 kb on - strandat 324.096 kb on - strandat 324.107 kb on + strandat 324.107 kb on + strandat 324.288 kb on + strand, within PfGW456L13_276at 324.289 kb on - strand, within PfGW456L13_276at 324.623 kb on + strandat 324.624 kb on - strandat 324.639 kb on + strandat 324.639 kb on + strandat 324.640 kb on - strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.725 kb on + strandat 324.726 kb on - strandat 324.726 kb on - strandat 324.726 kb on - strandat 324.726 kb on - strandat 324.726 kb on - strandat 324.726 kb on - strandat 324.726 kb on - strandat 324.726 kb on - strandat 324.729 kb on + strandat 324.729 kb on + strandat 324.729 kb on + strandat 324.729 kb on + strandat 324.729 kb on + strandat 324.729 kb on + strandat 324.730 kb on - strandat 324.730 kb on - strandat 324.730 kb on - strandat 324.730 kb on - strandat 324.730 kb on - strandat 324.746 kb on + strandat 324.831 kb on + strand, within PfGW456L13_277at 324.832 kb on - strand, within PfGW456L13_277at 324.832 kb on - strand, within PfGW456L13_277at 325.193 kb on + strand, within PfGW456L13_277at 325.193 kb on + strand, within PfGW456L13_277at 325.309 kb on + strand, within PfGW456L13_277at 325.310 kb on - strand, within PfGW456L13_277at 325.310 kb on - strand, within PfGW456L13_277at 325.310 kb on - strand, within PfGW456L13_277at 325.418 kb on - strand, within PfGW456L13_277at 325.418 kb on - strand, within PfGW456L13_277at 325.531 kb on + strand, within PfGW456L13_277at 325.531 kb on + strand, within PfGW456L13_277at 325.531 kb on + strand, within PfGW456L13_277at 325.532 kb on - strand, within PfGW456L13_277

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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323,144 + PfGW456L13_275 0.30 -0.1
323,270 + PfGW456L13_275 0.42 -0.7
323,804 - -0.4
323,944 + -0.4
323,964 + +0.5
324,067 - -0.3
324,095 + -0.8
324,095 + -1.9
324,096 - -0.9
324,096 - -0.9
324,096 - -0.2
324,107 + -2.1
324,107 + +0.1
324,288 + PfGW456L13_276 0.45 -1.2
324,289 - PfGW456L13_276 0.46 -1.9
324,623 + -3.2
324,624 - -2.2
324,639 + -1.6
324,639 + -0.6
324,640 - -0.4
324,725 + +1.0
324,725 + +1.9
324,725 + -1.4
324,725 + +0.8
324,725 + +0.5
324,725 + -1.2
324,725 + -0.4
324,725 + +1.2
324,725 + +1.3
324,725 + +1.4
324,725 + -0.4
324,725 + +0.3
324,725 + -0.4
324,725 + -0.5
324,726 - -2.1
324,726 - +1.1
324,726 - -0.1
324,726 - +2.1
324,726 - +0.6
324,726 - -0.8
324,726 - +0.7
324,726 - -0.7
324,729 + -1.5
324,729 + -0.4
324,729 + -1.2
324,729 + -1.7
324,729 + -0.8
324,729 + -1.6
324,730 - -0.5
324,730 - -0.9
324,730 - -0.7
324,730 - +0.6
324,730 - -0.2
324,746 + +2.0
324,831 + PfGW456L13_277 0.12 -0.9
324,832 - PfGW456L13_277 0.12 +1.5
324,832 - PfGW456L13_277 0.12 +1.1
325,193 + PfGW456L13_277 0.29 -0.5
325,193 + PfGW456L13_277 0.29 +0.7
325,309 + PfGW456L13_277 0.35 -0.7
325,310 - PfGW456L13_277 0.35 +0.3
325,310 - PfGW456L13_277 0.35 -1.0
325,310 - PfGW456L13_277 0.35 -1.1
325,418 - PfGW456L13_277 0.40 +1.0
325,418 - PfGW456L13_277 0.40 -0.4
325,531 + PfGW456L13_277 0.46 -0.7
325,531 + PfGW456L13_277 0.46 +0.6
325,531 + PfGW456L13_277 0.46 +1.6
325,532 - PfGW456L13_277 0.46 +0.2

Or see this region's nucleotide sequence