Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2631

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2629 and PfGW456L13_2630 overlap by 4 nucleotidesPfGW456L13_2630 and PfGW456L13_2631 are separated by 2 nucleotidesPfGW456L13_2631 and PfGW456L13_2632 are separated by 72 nucleotides PfGW456L13_2629 - NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3), at 2,927,426 to 2,928,781 _2629 PfGW456L13_2630 - NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3), at 2,928,778 to 2,929,275 _2630 PfGW456L13_2631 - NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3), at 2,929,278 to 2,931,062 _2631 PfGW456L13_2632 - NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3), at 2,931,135 to 2,931,809 _2632 Position (kb) 2929 2930 2931 2932Strain fitness (log2 ratio) -1 0 1 2at 2928.381 kb on + strand, within PfGW456L13_2629at 2928.781 kb on + strandat 2928.782 kb on - strandat 2928.782 kb on - strandat 2928.782 kb on - strandat 2928.786 kb on - strandat 2928.986 kb on + strand, within PfGW456L13_2630at 2929.052 kb on + strand, within PfGW456L13_2630at 2929.322 kb on - strandat 2929.691 kb on - strand, within PfGW456L13_2631at 2930.102 kb on - strand, within PfGW456L13_2631at 2930.779 kb on + strand, within PfGW456L13_2631at 2930.780 kb on - strand, within PfGW456L13_2631at 2930.858 kb on - strand, within PfGW456L13_2631at 2931.041 kb on - strandat 2931.066 kb on + strandat 2931.066 kb on + strandat 2931.071 kb on - strandat 2931.089 kb on - strandat 2931.089 kb on - strandat 2931.114 kb on + strandat 2931.115 kb on - strandat 2931.115 kb on - strandat 2931.220 kb on + strand, within PfGW456L13_2632at 2931.383 kb on - strand, within PfGW456L13_2632at 2931.604 kb on + strand, within PfGW456L13_2632at 2931.628 kb on + strand, within PfGW456L13_2632at 2931.723 kb on + strand, within PfGW456L13_2632at 2931.889 kb on + strandat 2931.890 kb on - strandat 2931.893 kb on + strandat 2931.920 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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2,928,381 + PfGW456L13_2629 0.70 +0.7
2,928,781 + +1.5
2,928,782 - +0.1
2,928,782 - -1.1
2,928,782 - -1.0
2,928,786 - -0.1
2,928,986 + PfGW456L13_2630 0.42 -0.3
2,929,052 + PfGW456L13_2630 0.55 -0.3
2,929,322 - -0.5
2,929,691 - PfGW456L13_2631 0.23 -0.7
2,930,102 - PfGW456L13_2631 0.46 -1.1
2,930,779 + PfGW456L13_2631 0.84 -0.1
2,930,780 - PfGW456L13_2631 0.84 -0.1
2,930,858 - PfGW456L13_2631 0.89 +0.1
2,931,041 - -1.1
2,931,066 + -0.3
2,931,066 + -0.7
2,931,071 - -1.0
2,931,089 - -1.5
2,931,089 - +1.9
2,931,114 + -0.7
2,931,115 - -0.1
2,931,115 - +0.5
2,931,220 + PfGW456L13_2632 0.13 -0.2
2,931,383 - PfGW456L13_2632 0.37 -0.5
2,931,604 + PfGW456L13_2632 0.69 +0.5
2,931,628 + PfGW456L13_2632 0.73 -1.2
2,931,723 + PfGW456L13_2632 0.87 -1.0
2,931,889 + -0.7
2,931,890 - -0.1
2,931,893 + -1.2
2,931,920 - +0.5

Or see this region's nucleotide sequence