Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2629 and PfGW456L13_2630 overlap by 4 nucleotides PfGW456L13_2630 and PfGW456L13_2631 are separated by 2 nucleotides PfGW456L13_2631 and PfGW456L13_2632 are separated by 72 nucleotides
PfGW456L13_2629 - NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3), at 2,927,426 to 2,928,781
_2629
PfGW456L13_2630 - NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3), at 2,928,778 to 2,929,275
_2630
PfGW456L13_2631 - NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3), at 2,929,278 to 2,931,062
_2631
PfGW456L13_2632 - NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3), at 2,931,135 to 2,931,809
_2632
Position (kb)
2929
2930
2931
2932 Strain fitness (log2 ratio)
-1
0
1
2 at 2928.381 kb on + strand, within PfGW456L13_2629 at 2928.781 kb on + strand at 2928.782 kb on - strand at 2928.782 kb on - strand at 2928.782 kb on - strand at 2928.786 kb on - strand at 2928.986 kb on + strand, within PfGW456L13_2630 at 2929.052 kb on + strand, within PfGW456L13_2630 at 2929.322 kb on - strand at 2929.691 kb on - strand, within PfGW456L13_2631 at 2930.102 kb on - strand, within PfGW456L13_2631 at 2930.779 kb on + strand, within PfGW456L13_2631 at 2930.780 kb on - strand, within PfGW456L13_2631 at 2930.858 kb on - strand, within PfGW456L13_2631 at 2931.041 kb on - strand at 2931.066 kb on + strand at 2931.066 kb on + strand at 2931.071 kb on - strand at 2931.089 kb on - strand at 2931.089 kb on - strand at 2931.114 kb on + strand at 2931.115 kb on - strand at 2931.115 kb on - strand at 2931.220 kb on + strand, within PfGW456L13_2632 at 2931.383 kb on - strand, within PfGW456L13_2632 at 2931.604 kb on + strand, within PfGW456L13_2632 at 2931.628 kb on + strand, within PfGW456L13_2632 at 2931.723 kb on + strand, within PfGW456L13_2632 at 2931.889 kb on + strand at 2931.890 kb on - strand at 2931.893 kb on + strand at 2931.920 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 2,928,381 + PfGW456L13_2629 0.70 +0.7 2,928,781 + +1.5 2,928,782 - +0.1 2,928,782 - -1.1 2,928,782 - -1.0 2,928,786 - -0.1 2,928,986 + PfGW456L13_2630 0.42 -0.3 2,929,052 + PfGW456L13_2630 0.55 -0.3 2,929,322 - -0.5 2,929,691 - PfGW456L13_2631 0.23 -0.7 2,930,102 - PfGW456L13_2631 0.46 -1.1 2,930,779 + PfGW456L13_2631 0.84 -0.1 2,930,780 - PfGW456L13_2631 0.84 -0.1 2,930,858 - PfGW456L13_2631 0.89 +0.1 2,931,041 - -1.1 2,931,066 + -0.3 2,931,066 + -0.7 2,931,071 - -1.0 2,931,089 - -1.5 2,931,089 - +1.9 2,931,114 + -0.7 2,931,115 - -0.1 2,931,115 - +0.5 2,931,220 + PfGW456L13_2632 0.13 -0.2 2,931,383 - PfGW456L13_2632 0.37 -0.5 2,931,604 + PfGW456L13_2632 0.69 +0.5 2,931,628 + PfGW456L13_2632 0.73 -1.2 2,931,723 + PfGW456L13_2632 0.87 -1.0 2,931,889 + -0.7 2,931,890 - -0.1 2,931,893 + -1.2 2,931,920 - +0.5
Or see this region's nucleotide sequence