Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2622 and PfGW456L13_2623 are separated by 39 nucleotides PfGW456L13_2623 and PfGW456L13_2624 overlap by 4 nucleotides PfGW456L13_2624 and PfGW456L13_2625 are separated by 2 nucleotides PfGW456L13_2625 and PfGW456L13_2626 are separated by 9 nucleotides
PfGW456L13_2622 - NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3), at 2,918,768 to 2,920,300
_2622
PfGW456L13_2623 - NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3), at 2,920,340 to 2,922,193
_2623
PfGW456L13_2624 - NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3), at 2,922,190 to 2,922,498
_2624
PfGW456L13_2625 - NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3), at 2,922,501 to 2,923,004
_2625
PfGW456L13_2626 - NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3), at 2,923,014 to 2,923,559
_2626
Position (kb)
2920
2921
2922
2923 Strain fitness (log2 ratio)
-1
0
1 at 2919.717 kb on - strand, within PfGW456L13_2622 at 2919.847 kb on - strand, within PfGW456L13_2622 at 2920.404 kb on + strand at 2920.754 kb on + strand, within PfGW456L13_2623 at 2921.715 kb on + strand, within PfGW456L13_2623 at 2921.950 kb on - strand, within PfGW456L13_2623 at 2923.092 kb on - strand, within PfGW456L13_2626 at 2923.092 kb on - strand, within PfGW456L13_2626 at 2923.092 kb on - strand, within PfGW456L13_2626 at 2923.105 kb on + strand, within PfGW456L13_2626
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 2,919,717 - PfGW456L13_2622 0.62 -0.5 2,919,847 - PfGW456L13_2622 0.70 -0.7 2,920,404 + +0.7 2,920,754 + PfGW456L13_2623 0.22 -1.2 2,921,715 + PfGW456L13_2623 0.74 -0.3 2,921,950 - PfGW456L13_2623 0.87 -1.1 2,923,092 - PfGW456L13_2626 0.14 +0.1 2,923,092 - PfGW456L13_2626 0.14 -1.2 2,923,092 - PfGW456L13_2626 0.14 +0.1 2,923,105 + PfGW456L13_2626 0.17 -1.1
Or see this region's nucleotide sequence