Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2623

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2622 and PfGW456L13_2623 are separated by 39 nucleotidesPfGW456L13_2623 and PfGW456L13_2624 overlap by 4 nucleotidesPfGW456L13_2624 and PfGW456L13_2625 are separated by 2 nucleotidesPfGW456L13_2625 and PfGW456L13_2626 are separated by 9 nucleotides PfGW456L13_2622 - NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3), at 2,918,768 to 2,920,300 _2622 PfGW456L13_2623 - NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3), at 2,920,340 to 2,922,193 _2623 PfGW456L13_2624 - NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3), at 2,922,190 to 2,922,498 _2624 PfGW456L13_2625 - NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3), at 2,922,501 to 2,923,004 _2625 PfGW456L13_2626 - NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3), at 2,923,014 to 2,923,559 _2626 Position (kb) 2920 2921 2922 2923Strain fitness (log2 ratio) -1 0 1at 2919.717 kb on - strand, within PfGW456L13_2622at 2919.847 kb on - strand, within PfGW456L13_2622at 2920.404 kb on + strandat 2920.754 kb on + strand, within PfGW456L13_2623at 2921.715 kb on + strand, within PfGW456L13_2623at 2921.950 kb on - strand, within PfGW456L13_2623at 2923.092 kb on - strand, within PfGW456L13_2626at 2923.092 kb on - strand, within PfGW456L13_2626at 2923.092 kb on - strand, within PfGW456L13_2626at 2923.105 kb on + strand, within PfGW456L13_2626

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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2,919,717 - PfGW456L13_2622 0.62 -0.5
2,919,847 - PfGW456L13_2622 0.70 -0.7
2,920,404 + +0.7
2,920,754 + PfGW456L13_2623 0.22 -1.2
2,921,715 + PfGW456L13_2623 0.74 -0.3
2,921,950 - PfGW456L13_2623 0.87 -1.1
2,923,092 - PfGW456L13_2626 0.14 +0.1
2,923,092 - PfGW456L13_2626 0.14 -1.2
2,923,092 - PfGW456L13_2626 0.14 +0.1
2,923,105 + PfGW456L13_2626 0.17 -1.1

Or see this region's nucleotide sequence