Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2470

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2468 and PfGW456L13_2469 are separated by 77 nucleotidesPfGW456L13_2469 and PfGW456L13_2470 are separated by 261 nucleotidesPfGW456L13_2470 and PfGW456L13_2471 are separated by 135 nucleotidesPfGW456L13_2471 and PfGW456L13_2472 are separated by 279 nucleotides PfGW456L13_2468 - Putative outer membrane lipoprotein, at 2,737,082 to 2,738,173 _2468 PfGW456L13_2469 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 2,738,251 to 2,738,730 _2469 PfGW456L13_2470 - Uncharacterized GST-like protein yncG, at 2,738,992 to 2,739,615 _2470 PfGW456L13_2471 - Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205), at 2,739,751 to 2,740,239 _2471 PfGW456L13_2472 - DNA polymerase II (EC 2.7.7.7), at 2,740,519 to 2,742,882 _2472 Position (kb) 2738 2739 2740Strain fitness (log2 ratio) -2 -1 0 1at 2738.194 kb on - strandat 2738.194 kb on - strandat 2738.194 kb on - strandat 2738.912 kb on + strandat 2738.912 kb on + strandat 2738.912 kb on + strandat 2738.912 kb on + strandat 2738.912 kb on + strandat 2738.912 kb on + strandat 2738.912 kb on + strandat 2738.912 kb on + strandat 2738.912 kb on + strandat 2738.912 kb on + strandat 2738.912 kb on + strandat 2738.913 kb on - strandat 2738.913 kb on - strandat 2738.913 kb on - strandat 2738.913 kb on - strandat 2738.913 kb on - strandat 2738.975 kb on + strandat 2738.991 kb on + strandat 2738.991 kb on + strandat 2738.991 kb on + strandat 2738.991 kb on + strandat 2738.991 kb on + strandat 2738.991 kb on + strandat 2738.991 kb on + strandat 2738.991 kb on + strandat 2738.991 kb on + strandat 2738.991 kb on + strandat 2738.992 kb on - strandat 2738.992 kb on - strandat 2738.992 kb on - strandat 2738.992 kb on - strandat 2738.992 kb on - strandat 2738.992 kb on - strandat 2738.992 kb on - strandat 2738.992 kb on - strandat 2738.995 kb on + strandat 2739.005 kb on - strandat 2739.280 kb on + strand, within PfGW456L13_2470at 2739.280 kb on + strand, within PfGW456L13_2470at 2739.281 kb on - strand, within PfGW456L13_2470at 2739.281 kb on - strand, within PfGW456L13_2470at 2739.281 kb on - strand, within PfGW456L13_2470at 2739.298 kb on + strand, within PfGW456L13_2470at 2739.299 kb on - strand, within PfGW456L13_2470at 2739.442 kb on + strand, within PfGW456L13_2470at 2739.442 kb on + strand, within PfGW456L13_2470at 2739.443 kb on - strand, within PfGW456L13_2470at 2739.627 kb on - strandat 2739.627 kb on - strandat 2739.627 kb on - strandat 2739.674 kb on + strandat 2739.674 kb on + strandat 2739.674 kb on + strandat 2739.674 kb on + strandat 2739.674 kb on + strandat 2739.674 kb on + strandat 2739.674 kb on + strandat 2739.674 kb on + strandat 2739.674 kb on + strandat 2739.674 kb on + strandat 2739.675 kb on - strandat 2739.675 kb on - strandat 2739.675 kb on - strandat 2739.675 kb on - strandat 2739.675 kb on - strandat 2739.675 kb on - strandat 2739.675 kb on - strandat 2739.675 kb on - strandat 2739.675 kb on - strandat 2739.767 kb on + strandat 2739.767 kb on + strandat 2739.767 kb on + strandat 2739.767 kb on + strandat 2739.768 kb on - strandat 2739.768 kb on - strandat 2739.768 kb on - strandat 2739.768 kb on - strandat 2739.768 kb on - strandat 2740.269 kb on + strandat 2740.269 kb on + strandat 2740.269 kb on + strandat 2740.269 kb on + strandat 2740.269 kb on + strandat 2740.269 kb on + strandat 2740.270 kb on - strandat 2740.393 kb on + strandat 2740.393 kb on + strandat 2740.393 kb on + strandat 2740.393 kb on + strandat 2740.393 kb on + strandat 2740.530 kb on - strandat 2740.530 kb on - strandat 2740.530 kb on - strandat 2740.530 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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2,738,194 - +0.7
2,738,194 - -1.4
2,738,194 - +0.0
2,738,912 + -0.0
2,738,912 + +0.3
2,738,912 + -1.8
2,738,912 + +0.3
2,738,912 + +1.3
2,738,912 + -1.1
2,738,912 + +0.0
2,738,912 + -0.4
2,738,912 + -1.1
2,738,912 + -0.1
2,738,912 + +0.5
2,738,913 - +0.1
2,738,913 - +0.1
2,738,913 - +0.5
2,738,913 - -0.5
2,738,913 - -0.3
2,738,975 + -0.2
2,738,991 + -0.6
2,738,991 + +0.6
2,738,991 + +0.5
2,738,991 + +0.2
2,738,991 + +0.5
2,738,991 + +0.1
2,738,991 + +0.3
2,738,991 + +0.6
2,738,991 + -0.5
2,738,991 + -1.8
2,738,992 - -0.5
2,738,992 - +0.2
2,738,992 - +0.7
2,738,992 - -1.3
2,738,992 - -1.2
2,738,992 - -1.5
2,738,992 - +1.0
2,738,992 - +0.3
2,738,995 + +0.7
2,739,005 - -1.4
2,739,280 + PfGW456L13_2470 0.46 -1.9
2,739,280 + PfGW456L13_2470 0.46 -1.7
2,739,281 - PfGW456L13_2470 0.46 -0.0
2,739,281 - PfGW456L13_2470 0.46 -0.7
2,739,281 - PfGW456L13_2470 0.46 -0.2
2,739,298 + PfGW456L13_2470 0.49 -1.6
2,739,299 - PfGW456L13_2470 0.49 -0.6
2,739,442 + PfGW456L13_2470 0.72 -0.7
2,739,442 + PfGW456L13_2470 0.72 -2.3
2,739,443 - PfGW456L13_2470 0.72 -0.3
2,739,627 - +0.4
2,739,627 - +1.0
2,739,627 - +0.3
2,739,674 + -1.4
2,739,674 + -0.9
2,739,674 + -0.8
2,739,674 + +1.2
2,739,674 + -0.1
2,739,674 + -0.0
2,739,674 + -0.3
2,739,674 + +0.5
2,739,674 + -1.0
2,739,674 + +0.5
2,739,675 - +0.5
2,739,675 - -0.1
2,739,675 - -0.0
2,739,675 - +1.2
2,739,675 - -0.5
2,739,675 - +0.5
2,739,675 - -0.5
2,739,675 - +0.6
2,739,675 - -0.0
2,739,767 + -1.0
2,739,767 + -0.1
2,739,767 + -0.0
2,739,767 + -0.2
2,739,768 - +0.3
2,739,768 - +0.4
2,739,768 - -0.2
2,739,768 - +1.0
2,739,768 - -1.5
2,740,269 + -0.6
2,740,269 + +0.7
2,740,269 + -0.3
2,740,269 + +0.9
2,740,269 + +1.6
2,740,269 + -0.6
2,740,270 - -0.9
2,740,393 + -0.5
2,740,393 + -1.8
2,740,393 + -0.3
2,740,393 + +0.4
2,740,393 + +0.3
2,740,530 - +0.1
2,740,530 - +0.1
2,740,530 - -1.5
2,740,530 - -0.8

Or see this region's nucleotide sequence