Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1523 and PfGW456L13_1524 are separated by 710 nucleotides PfGW456L13_1524 and PfGW456L13_1525 are separated by 22 nucleotides
PfGW456L13_1523 - Poly(A) polymerase (EC 2.7.7.19), at 1,674,029 to 1,675,429
_1523
PfGW456L13_1524 - Two-component sensor CbrB: intrcellular carbon:nitrogen balance, at 1,676,140 to 1,677,573
_1524
PfGW456L13_1525 - Two-component sensor CbrA: intrcellular carbon:nitrogen balance, at 1,677,596 to 1,680,544
_1525
Position (kb)
1676
1677
1678 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1675.261 kb on - strand, within PfGW456L13_1523 at 1675.452 kb on - strand at 1675.452 kb on - strand at 1675.503 kb on + strand at 1675.519 kb on + strand at 1675.519 kb on + strand at 1675.520 kb on - strand at 1675.533 kb on + strand at 1675.533 kb on + strand at 1675.533 kb on + strand at 1675.533 kb on + strand at 1675.534 kb on - strand at 1675.534 kb on - strand at 1675.534 kb on - strand at 1675.542 kb on + strand at 1675.542 kb on + strand at 1675.542 kb on + strand at 1675.542 kb on + strand at 1675.542 kb on + strand at 1675.543 kb on - strand at 1675.543 kb on - strand at 1675.543 kb on - strand at 1675.543 kb on - strand at 1675.543 kb on - strand at 1675.543 kb on - strand at 1675.543 kb on - strand at 1675.543 kb on - strand at 1675.543 kb on - strand at 1675.605 kb on + strand at 1675.605 kb on + strand at 1675.605 kb on + strand at 1675.605 kb on + strand at 1675.605 kb on + strand at 1675.606 kb on - strand at 1675.606 kb on - strand at 1675.619 kb on - strand at 1675.619 kb on - strand at 1675.775 kb on + strand at 1675.775 kb on + strand at 1675.776 kb on - strand at 1675.824 kb on + strand at 1675.825 kb on - strand at 1675.825 kb on - strand at 1675.850 kb on + strand at 1675.851 kb on - strand at 1675.851 kb on - strand at 1675.877 kb on + strand at 1675.878 kb on - strand at 1675.908 kb on - strand at 1675.908 kb on - strand at 1675.908 kb on - strand at 1675.908 kb on - strand at 1675.929 kb on + strand at 1675.930 kb on - strand at 1675.940 kb on + strand at 1675.941 kb on - strand at 1675.949 kb on + strand at 1675.951 kb on + strand at 1675.951 kb on + strand at 1675.951 kb on + strand at 1676.052 kb on + strand at 1676.053 kb on - strand at 1676.087 kb on + strand at 1676.087 kb on + strand at 1676.088 kb on - strand at 1676.135 kb on - strand at 1676.288 kb on + strand, within PfGW456L13_1524 at 1676.288 kb on + strand, within PfGW456L13_1524 at 1676.289 kb on - strand, within PfGW456L13_1524 at 1676.289 kb on - strand, within PfGW456L13_1524 at 1676.289 kb on - strand, within PfGW456L13_1524 at 1676.332 kb on - strand, within PfGW456L13_1524 at 1676.657 kb on + strand, within PfGW456L13_1524 at 1676.658 kb on - strand, within PfGW456L13_1524 at 1676.658 kb on - strand, within PfGW456L13_1524 at 1676.658 kb on - strand, within PfGW456L13_1524 at 1676.658 kb on - strand, within PfGW456L13_1524 at 1676.785 kb on + strand, within PfGW456L13_1524 at 1677.098 kb on + strand, within PfGW456L13_1524 at 1677.217 kb on + strand, within PfGW456L13_1524 at 1677.218 kb on - strand, within PfGW456L13_1524 at 1677.290 kb on + strand, within PfGW456L13_1524 at 1677.290 kb on + strand, within PfGW456L13_1524 at 1677.290 kb on + strand, within PfGW456L13_1524 at 1677.291 kb on - strand, within PfGW456L13_1524 at 1677.341 kb on + strand, within PfGW456L13_1524 at 1677.342 kb on - strand, within PfGW456L13_1524 at 1677.724 kb on - strand at 1677.724 kb on - strand at 1677.814 kb on + strand at 1677.815 kb on - strand at 1677.933 kb on - strand, within PfGW456L13_1525 at 1677.990 kb on + strand, within PfGW456L13_1525 at 1677.991 kb on - strand, within PfGW456L13_1525 at 1677.991 kb on - strand, within PfGW456L13_1525 at 1678.516 kb on + strand, within PfGW456L13_1525
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 1,675,261 - PfGW456L13_1523 0.88 +0.2 1,675,452 - -0.5 1,675,452 - -1.1 1,675,503 + -2.0 1,675,519 + +1.2 1,675,519 + -0.4 1,675,520 - -1.0 1,675,533 + +0.5 1,675,533 + -1.0 1,675,533 + -1.1 1,675,533 + +0.2 1,675,534 - +0.0 1,675,534 - -2.5 1,675,534 - +1.0 1,675,542 + -0.3 1,675,542 + +0.2 1,675,542 + +4.6 1,675,542 + +0.6 1,675,542 + -1.3 1,675,543 - -0.3 1,675,543 - +1.2 1,675,543 - -0.2 1,675,543 - +1.1 1,675,543 - -0.0 1,675,543 - +0.8 1,675,543 - -1.2 1,675,543 - -1.4 1,675,543 - -1.1 1,675,605 + +0.7 1,675,605 + +0.8 1,675,605 + -1.8 1,675,605 + -0.6 1,675,605 + +0.4 1,675,606 - -0.6 1,675,606 - -1.0 1,675,619 - -0.3 1,675,619 - -1.0 1,675,775 + +1.4 1,675,775 + -0.0 1,675,776 - +0.9 1,675,824 + +0.5 1,675,825 - +0.3 1,675,825 - -0.2 1,675,850 + +0.2 1,675,851 - +1.1 1,675,851 - -1.3 1,675,877 + +0.1 1,675,878 - +0.3 1,675,908 - -0.9 1,675,908 - -0.8 1,675,908 - -0.4 1,675,908 - -0.1 1,675,929 + -1.0 1,675,930 - +0.9 1,675,940 + +2.4 1,675,941 - +0.6 1,675,949 + +0.5 1,675,951 + +0.7 1,675,951 + -0.8 1,675,951 + -0.2 1,676,052 + +0.6 1,676,053 - +0.4 1,676,087 + -0.2 1,676,087 + -0.0 1,676,088 - +0.4 1,676,135 - -1.8 1,676,288 + PfGW456L13_1524 0.10 -1.0 1,676,288 + PfGW456L13_1524 0.10 -1.5 1,676,289 - PfGW456L13_1524 0.10 +0.2 1,676,289 - PfGW456L13_1524 0.10 -1.4 1,676,289 - PfGW456L13_1524 0.10 -1.3 1,676,332 - PfGW456L13_1524 0.13 -1.0 1,676,657 + PfGW456L13_1524 0.36 -1.1 1,676,658 - PfGW456L13_1524 0.36 -0.9 1,676,658 - PfGW456L13_1524 0.36 -0.7 1,676,658 - PfGW456L13_1524 0.36 +1.0 1,676,658 - PfGW456L13_1524 0.36 -1.0 1,676,785 + PfGW456L13_1524 0.45 -0.8 1,677,098 + PfGW456L13_1524 0.67 -0.8 1,677,217 + PfGW456L13_1524 0.75 -0.9 1,677,218 - PfGW456L13_1524 0.75 -0.7 1,677,290 + PfGW456L13_1524 0.80 +0.4 1,677,290 + PfGW456L13_1524 0.80 -0.8 1,677,290 + PfGW456L13_1524 0.80 -0.7 1,677,291 - PfGW456L13_1524 0.80 -0.6 1,677,341 + PfGW456L13_1524 0.84 -1.4 1,677,342 - PfGW456L13_1524 0.84 +0.7 1,677,724 - +1.0 1,677,724 - +0.2 1,677,814 + -0.2 1,677,815 - +0.7 1,677,933 - PfGW456L13_1525 0.11 +0.0 1,677,990 + PfGW456L13_1525 0.13 -0.6 1,677,991 - PfGW456L13_1525 0.13 +1.1 1,677,991 - PfGW456L13_1525 0.13 -0.8 1,678,516 + PfGW456L13_1525 0.31 +1.7
Or see this region's nucleotide sequence