Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1524

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1523 and PfGW456L13_1524 are separated by 710 nucleotidesPfGW456L13_1524 and PfGW456L13_1525 are separated by 22 nucleotides PfGW456L13_1523 - Poly(A) polymerase (EC 2.7.7.19), at 1,674,029 to 1,675,429 _1523 PfGW456L13_1524 - Two-component sensor CbrB: intrcellular carbon:nitrogen balance, at 1,676,140 to 1,677,573 _1524 PfGW456L13_1525 - Two-component sensor CbrA: intrcellular carbon:nitrogen balance, at 1,677,596 to 1,680,544 _1525 Position (kb) 1676 1677 1678Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1675.261 kb on - strand, within PfGW456L13_1523at 1675.452 kb on - strandat 1675.452 kb on - strandat 1675.503 kb on + strandat 1675.519 kb on + strandat 1675.519 kb on + strandat 1675.520 kb on - strandat 1675.533 kb on + strandat 1675.533 kb on + strandat 1675.533 kb on + strandat 1675.533 kb on + strandat 1675.534 kb on - strandat 1675.534 kb on - strandat 1675.534 kb on - strandat 1675.542 kb on + strandat 1675.542 kb on + strandat 1675.542 kb on + strandat 1675.542 kb on + strandat 1675.542 kb on + strandat 1675.543 kb on - strandat 1675.543 kb on - strandat 1675.543 kb on - strandat 1675.543 kb on - strandat 1675.543 kb on - strandat 1675.543 kb on - strandat 1675.543 kb on - strandat 1675.543 kb on - strandat 1675.543 kb on - strandat 1675.605 kb on + strandat 1675.605 kb on + strandat 1675.605 kb on + strandat 1675.605 kb on + strandat 1675.605 kb on + strandat 1675.606 kb on - strandat 1675.606 kb on - strandat 1675.619 kb on - strandat 1675.619 kb on - strandat 1675.775 kb on + strandat 1675.775 kb on + strandat 1675.776 kb on - strandat 1675.824 kb on + strandat 1675.825 kb on - strandat 1675.825 kb on - strandat 1675.850 kb on + strandat 1675.851 kb on - strandat 1675.851 kb on - strandat 1675.877 kb on + strandat 1675.878 kb on - strandat 1675.908 kb on - strandat 1675.908 kb on - strandat 1675.908 kb on - strandat 1675.908 kb on - strandat 1675.929 kb on + strandat 1675.930 kb on - strandat 1675.940 kb on + strandat 1675.941 kb on - strandat 1675.949 kb on + strandat 1675.951 kb on + strandat 1675.951 kb on + strandat 1675.951 kb on + strandat 1676.052 kb on + strandat 1676.053 kb on - strandat 1676.087 kb on + strandat 1676.087 kb on + strandat 1676.088 kb on - strandat 1676.135 kb on - strandat 1676.288 kb on + strand, within PfGW456L13_1524at 1676.288 kb on + strand, within PfGW456L13_1524at 1676.289 kb on - strand, within PfGW456L13_1524at 1676.289 kb on - strand, within PfGW456L13_1524at 1676.289 kb on - strand, within PfGW456L13_1524at 1676.332 kb on - strand, within PfGW456L13_1524at 1676.657 kb on + strand, within PfGW456L13_1524at 1676.658 kb on - strand, within PfGW456L13_1524at 1676.658 kb on - strand, within PfGW456L13_1524at 1676.658 kb on - strand, within PfGW456L13_1524at 1676.658 kb on - strand, within PfGW456L13_1524at 1676.785 kb on + strand, within PfGW456L13_1524at 1677.098 kb on + strand, within PfGW456L13_1524at 1677.217 kb on + strand, within PfGW456L13_1524at 1677.218 kb on - strand, within PfGW456L13_1524at 1677.290 kb on + strand, within PfGW456L13_1524at 1677.290 kb on + strand, within PfGW456L13_1524at 1677.290 kb on + strand, within PfGW456L13_1524at 1677.291 kb on - strand, within PfGW456L13_1524at 1677.341 kb on + strand, within PfGW456L13_1524at 1677.342 kb on - strand, within PfGW456L13_1524at 1677.724 kb on - strandat 1677.724 kb on - strandat 1677.814 kb on + strandat 1677.815 kb on - strandat 1677.933 kb on - strand, within PfGW456L13_1525at 1677.990 kb on + strand, within PfGW456L13_1525at 1677.991 kb on - strand, within PfGW456L13_1525at 1677.991 kb on - strand, within PfGW456L13_1525at 1678.516 kb on + strand, within PfGW456L13_1525

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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1,675,261 - PfGW456L13_1523 0.88 +0.2
1,675,452 - -0.5
1,675,452 - -1.1
1,675,503 + -2.0
1,675,519 + +1.2
1,675,519 + -0.4
1,675,520 - -1.0
1,675,533 + +0.5
1,675,533 + -1.0
1,675,533 + -1.1
1,675,533 + +0.2
1,675,534 - +0.0
1,675,534 - -2.5
1,675,534 - +1.0
1,675,542 + -0.3
1,675,542 + +0.2
1,675,542 + +4.6
1,675,542 + +0.6
1,675,542 + -1.3
1,675,543 - -0.3
1,675,543 - +1.2
1,675,543 - -0.2
1,675,543 - +1.1
1,675,543 - -0.0
1,675,543 - +0.8
1,675,543 - -1.2
1,675,543 - -1.4
1,675,543 - -1.1
1,675,605 + +0.7
1,675,605 + +0.8
1,675,605 + -1.8
1,675,605 + -0.6
1,675,605 + +0.4
1,675,606 - -0.6
1,675,606 - -1.0
1,675,619 - -0.3
1,675,619 - -1.0
1,675,775 + +1.4
1,675,775 + -0.0
1,675,776 - +0.9
1,675,824 + +0.5
1,675,825 - +0.3
1,675,825 - -0.2
1,675,850 + +0.2
1,675,851 - +1.1
1,675,851 - -1.3
1,675,877 + +0.1
1,675,878 - +0.3
1,675,908 - -0.9
1,675,908 - -0.8
1,675,908 - -0.4
1,675,908 - -0.1
1,675,929 + -1.0
1,675,930 - +0.9
1,675,940 + +2.4
1,675,941 - +0.6
1,675,949 + +0.5
1,675,951 + +0.7
1,675,951 + -0.8
1,675,951 + -0.2
1,676,052 + +0.6
1,676,053 - +0.4
1,676,087 + -0.2
1,676,087 + -0.0
1,676,088 - +0.4
1,676,135 - -1.8
1,676,288 + PfGW456L13_1524 0.10 -1.0
1,676,288 + PfGW456L13_1524 0.10 -1.5
1,676,289 - PfGW456L13_1524 0.10 +0.2
1,676,289 - PfGW456L13_1524 0.10 -1.4
1,676,289 - PfGW456L13_1524 0.10 -1.3
1,676,332 - PfGW456L13_1524 0.13 -1.0
1,676,657 + PfGW456L13_1524 0.36 -1.1
1,676,658 - PfGW456L13_1524 0.36 -0.9
1,676,658 - PfGW456L13_1524 0.36 -0.7
1,676,658 - PfGW456L13_1524 0.36 +1.0
1,676,658 - PfGW456L13_1524 0.36 -1.0
1,676,785 + PfGW456L13_1524 0.45 -0.8
1,677,098 + PfGW456L13_1524 0.67 -0.8
1,677,217 + PfGW456L13_1524 0.75 -0.9
1,677,218 - PfGW456L13_1524 0.75 -0.7
1,677,290 + PfGW456L13_1524 0.80 +0.4
1,677,290 + PfGW456L13_1524 0.80 -0.8
1,677,290 + PfGW456L13_1524 0.80 -0.7
1,677,291 - PfGW456L13_1524 0.80 -0.6
1,677,341 + PfGW456L13_1524 0.84 -1.4
1,677,342 - PfGW456L13_1524 0.84 +0.7
1,677,724 - +1.0
1,677,724 - +0.2
1,677,814 + -0.2
1,677,815 - +0.7
1,677,933 - PfGW456L13_1525 0.11 +0.0
1,677,990 + PfGW456L13_1525 0.13 -0.6
1,677,991 - PfGW456L13_1525 0.13 +1.1
1,677,991 - PfGW456L13_1525 0.13 -0.8
1,678,516 + PfGW456L13_1525 0.31 +1.7

Or see this region's nucleotide sequence