Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1192

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1190 and PfGW456L13_1191 are separated by 83 nucleotidesPfGW456L13_1191 and PfGW456L13_1192 overlap by 10 nucleotidesPfGW456L13_1192 and PfGW456L13_1193 are separated by 81 nucleotides PfGW456L13_1190 - Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY, at 1,328,719 to 1,329,288 _1190 PfGW456L13_1191 - Dihydroneopterin aldolase (EC 4.1.2.25), at 1,329,372 to 1,329,719 _1191 PfGW456L13_1192 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3), at 1,329,710 to 1,330,228 _1192 PfGW456L13_1193 - tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25), at 1,330,310 to 1,331,539 _1193 Position (kb) 1329 1330 1331Strain fitness (log2 ratio) -1 0 1 2at 1328.755 kb on + strandat 1328.756 kb on - strandat 1328.883 kb on + strand, within PfGW456L13_1190at 1328.894 kb on + strand, within PfGW456L13_1190at 1328.894 kb on + strand, within PfGW456L13_1190at 1328.894 kb on + strand, within PfGW456L13_1190at 1328.895 kb on - strand, within PfGW456L13_1190at 1328.895 kb on - strand, within PfGW456L13_1190at 1328.895 kb on - strand, within PfGW456L13_1190at 1328.895 kb on - strand, within PfGW456L13_1190at 1328.943 kb on - strand, within PfGW456L13_1190at 1329.002 kb on + strand, within PfGW456L13_1190at 1329.002 kb on + strand, within PfGW456L13_1190at 1329.002 kb on + strand, within PfGW456L13_1190at 1329.003 kb on - strand, within PfGW456L13_1190at 1329.003 kb on - strand, within PfGW456L13_1190at 1329.003 kb on - strand, within PfGW456L13_1190at 1329.032 kb on + strand, within PfGW456L13_1190at 1329.032 kb on + strand, within PfGW456L13_1190at 1329.032 kb on + strand, within PfGW456L13_1190at 1329.032 kb on + strand, within PfGW456L13_1190at 1329.033 kb on - strand, within PfGW456L13_1190at 1329.033 kb on - strand, within PfGW456L13_1190at 1329.261 kb on - strandat 1329.278 kb on - strandat 1329.291 kb on + strandat 1329.291 kb on + strandat 1329.292 kb on - strandat 1329.292 kb on - strandat 1329.292 kb on - strandat 1329.292 kb on - strandat 1329.292 kb on - strandat 1329.292 kb on - strandat 1329.292 kb on - strandat 1329.295 kb on + strandat 1329.295 kb on + strandat 1329.296 kb on - strandat 1329.296 kb on - strandat 1329.296 kb on - strandat 1329.296 kb on - strandat 1329.296 kb on - strandat 1329.728 kb on + strandat 1329.728 kb on + strandat 1329.729 kb on - strandat 1329.729 kb on - strandat 1329.729 kb on - strandat 1329.729 kb on - strandat 1329.742 kb on + strandat 1329.888 kb on - strand, within PfGW456L13_1192at 1329.888 kb on - strand, within PfGW456L13_1192at 1329.993 kb on + strand, within PfGW456L13_1192at 1329.993 kb on + strand, within PfGW456L13_1192at 1329.993 kb on + strand, within PfGW456L13_1192at 1329.993 kb on + strand, within PfGW456L13_1192at 1329.994 kb on - strand, within PfGW456L13_1192at 1329.994 kb on - strand, within PfGW456L13_1192at 1330.180 kb on - strandat 1330.231 kb on + strandat 1330.231 kb on + strandat 1330.231 kb on + strandat 1330.232 kb on - strandat 1330.232 kb on - strandat 1330.232 kb on - strandat 1330.263 kb on - strandat 1330.275 kb on + strandat 1330.275 kb on + strandat 1330.332 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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1,328,755 + -0.2
1,328,756 - -1.4
1,328,883 + PfGW456L13_1190 0.29 -1.5
1,328,894 + PfGW456L13_1190 0.31 -0.8
1,328,894 + PfGW456L13_1190 0.31 +0.3
1,328,894 + PfGW456L13_1190 0.31 +0.8
1,328,895 - PfGW456L13_1190 0.31 -0.8
1,328,895 - PfGW456L13_1190 0.31 -0.1
1,328,895 - PfGW456L13_1190 0.31 +1.2
1,328,895 - PfGW456L13_1190 0.31 +0.8
1,328,943 - PfGW456L13_1190 0.39 +1.5
1,329,002 + PfGW456L13_1190 0.50 +0.4
1,329,002 + PfGW456L13_1190 0.50 +1.6
1,329,002 + PfGW456L13_1190 0.50 -0.6
1,329,003 - PfGW456L13_1190 0.50 +0.4
1,329,003 - PfGW456L13_1190 0.50 -0.2
1,329,003 - PfGW456L13_1190 0.50 -0.1
1,329,032 + PfGW456L13_1190 0.55 -0.8
1,329,032 + PfGW456L13_1190 0.55 +0.8
1,329,032 + PfGW456L13_1190 0.55 -0.1
1,329,032 + PfGW456L13_1190 0.55 +0.5
1,329,033 - PfGW456L13_1190 0.55 +0.3
1,329,033 - PfGW456L13_1190 0.55 -0.3
1,329,261 - -1.1
1,329,278 - +0.6
1,329,291 + +0.3
1,329,291 + -0.0
1,329,292 - -0.4
1,329,292 - -0.3
1,329,292 - -0.2
1,329,292 - -0.6
1,329,292 - -0.4
1,329,292 - -0.1
1,329,292 - -0.6
1,329,295 + -0.4
1,329,295 + +0.9
1,329,296 - -0.0
1,329,296 - +0.6
1,329,296 - -0.0
1,329,296 - +0.4
1,329,296 - +0.5
1,329,728 + +1.3
1,329,728 + +0.4
1,329,729 - +0.5
1,329,729 - -0.0
1,329,729 - +0.2
1,329,729 - -1.2
1,329,742 + +0.4
1,329,888 - PfGW456L13_1192 0.34 -1.2
1,329,888 - PfGW456L13_1192 0.34 -0.5
1,329,993 + PfGW456L13_1192 0.55 -1.0
1,329,993 + PfGW456L13_1192 0.55 -0.7
1,329,993 + PfGW456L13_1192 0.55 -0.5
1,329,993 + PfGW456L13_1192 0.55 +1.0
1,329,994 - PfGW456L13_1192 0.55 +1.0
1,329,994 - PfGW456L13_1192 0.55 -0.6
1,330,180 - +0.7
1,330,231 + +0.7
1,330,231 + +0.9
1,330,231 + -1.2
1,330,232 - -1.1
1,330,232 - +1.0
1,330,232 - -0.4
1,330,263 - -0.9
1,330,275 + +2.2
1,330,275 + -0.0
1,330,332 + -1.4

Or see this region's nucleotide sequence