Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1190 and PfGW456L13_1191 are separated by 83 nucleotides PfGW456L13_1191 and PfGW456L13_1192 overlap by 10 nucleotides PfGW456L13_1192 and PfGW456L13_1193 are separated by 81 nucleotides
PfGW456L13_1190 - Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY, at 1,328,719 to 1,329,288
_1190
PfGW456L13_1191 - Dihydroneopterin aldolase (EC 4.1.2.25), at 1,329,372 to 1,329,719
_1191
PfGW456L13_1192 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3), at 1,329,710 to 1,330,228
_1192
PfGW456L13_1193 - tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25), at 1,330,310 to 1,331,539
_1193
Position (kb)
1329
1330
1331 Strain fitness (log2 ratio)
-1
0
1
2 at 1328.755 kb on + strand at 1328.756 kb on - strand at 1328.883 kb on + strand, within PfGW456L13_1190 at 1328.894 kb on + strand, within PfGW456L13_1190 at 1328.894 kb on + strand, within PfGW456L13_1190 at 1328.894 kb on + strand, within PfGW456L13_1190 at 1328.895 kb on - strand, within PfGW456L13_1190 at 1328.895 kb on - strand, within PfGW456L13_1190 at 1328.895 kb on - strand, within PfGW456L13_1190 at 1328.895 kb on - strand, within PfGW456L13_1190 at 1328.943 kb on - strand, within PfGW456L13_1190 at 1329.002 kb on + strand, within PfGW456L13_1190 at 1329.002 kb on + strand, within PfGW456L13_1190 at 1329.002 kb on + strand, within PfGW456L13_1190 at 1329.003 kb on - strand, within PfGW456L13_1190 at 1329.003 kb on - strand, within PfGW456L13_1190 at 1329.003 kb on - strand, within PfGW456L13_1190 at 1329.032 kb on + strand, within PfGW456L13_1190 at 1329.032 kb on + strand, within PfGW456L13_1190 at 1329.032 kb on + strand, within PfGW456L13_1190 at 1329.032 kb on + strand, within PfGW456L13_1190 at 1329.033 kb on - strand, within PfGW456L13_1190 at 1329.033 kb on - strand, within PfGW456L13_1190 at 1329.261 kb on - strand at 1329.278 kb on - strand at 1329.291 kb on + strand at 1329.291 kb on + strand at 1329.292 kb on - strand at 1329.292 kb on - strand at 1329.292 kb on - strand at 1329.292 kb on - strand at 1329.292 kb on - strand at 1329.292 kb on - strand at 1329.292 kb on - strand at 1329.295 kb on + strand at 1329.295 kb on + strand at 1329.296 kb on - strand at 1329.296 kb on - strand at 1329.296 kb on - strand at 1329.296 kb on - strand at 1329.296 kb on - strand at 1329.728 kb on + strand at 1329.728 kb on + strand at 1329.729 kb on - strand at 1329.729 kb on - strand at 1329.729 kb on - strand at 1329.729 kb on - strand at 1329.742 kb on + strand at 1329.888 kb on - strand, within PfGW456L13_1192 at 1329.888 kb on - strand, within PfGW456L13_1192 at 1329.993 kb on + strand, within PfGW456L13_1192 at 1329.993 kb on + strand, within PfGW456L13_1192 at 1329.993 kb on + strand, within PfGW456L13_1192 at 1329.993 kb on + strand, within PfGW456L13_1192 at 1329.994 kb on - strand, within PfGW456L13_1192 at 1329.994 kb on - strand, within PfGW456L13_1192 at 1330.180 kb on - strand at 1330.231 kb on + strand at 1330.231 kb on + strand at 1330.231 kb on + strand at 1330.232 kb on - strand at 1330.232 kb on - strand at 1330.232 kb on - strand at 1330.263 kb on - strand at 1330.275 kb on + strand at 1330.275 kb on + strand at 1330.332 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 1,328,755 + -0.2 1,328,756 - -1.4 1,328,883 + PfGW456L13_1190 0.29 -1.5 1,328,894 + PfGW456L13_1190 0.31 -0.8 1,328,894 + PfGW456L13_1190 0.31 +0.3 1,328,894 + PfGW456L13_1190 0.31 +0.8 1,328,895 - PfGW456L13_1190 0.31 -0.8 1,328,895 - PfGW456L13_1190 0.31 -0.1 1,328,895 - PfGW456L13_1190 0.31 +1.2 1,328,895 - PfGW456L13_1190 0.31 +0.8 1,328,943 - PfGW456L13_1190 0.39 +1.5 1,329,002 + PfGW456L13_1190 0.50 +0.4 1,329,002 + PfGW456L13_1190 0.50 +1.6 1,329,002 + PfGW456L13_1190 0.50 -0.6 1,329,003 - PfGW456L13_1190 0.50 +0.4 1,329,003 - PfGW456L13_1190 0.50 -0.2 1,329,003 - PfGW456L13_1190 0.50 -0.1 1,329,032 + PfGW456L13_1190 0.55 -0.8 1,329,032 + PfGW456L13_1190 0.55 +0.8 1,329,032 + PfGW456L13_1190 0.55 -0.1 1,329,032 + PfGW456L13_1190 0.55 +0.5 1,329,033 - PfGW456L13_1190 0.55 +0.3 1,329,033 - PfGW456L13_1190 0.55 -0.3 1,329,261 - -1.1 1,329,278 - +0.6 1,329,291 + +0.3 1,329,291 + -0.0 1,329,292 - -0.4 1,329,292 - -0.3 1,329,292 - -0.2 1,329,292 - -0.6 1,329,292 - -0.4 1,329,292 - -0.1 1,329,292 - -0.6 1,329,295 + -0.4 1,329,295 + +0.9 1,329,296 - -0.0 1,329,296 - +0.6 1,329,296 - -0.0 1,329,296 - +0.4 1,329,296 - +0.5 1,329,728 + +1.3 1,329,728 + +0.4 1,329,729 - +0.5 1,329,729 - -0.0 1,329,729 - +0.2 1,329,729 - -1.2 1,329,742 + +0.4 1,329,888 - PfGW456L13_1192 0.34 -1.2 1,329,888 - PfGW456L13_1192 0.34 -0.5 1,329,993 + PfGW456L13_1192 0.55 -1.0 1,329,993 + PfGW456L13_1192 0.55 -0.7 1,329,993 + PfGW456L13_1192 0.55 -0.5 1,329,993 + PfGW456L13_1192 0.55 +1.0 1,329,994 - PfGW456L13_1192 0.55 +1.0 1,329,994 - PfGW456L13_1192 0.55 -0.6 1,330,180 - +0.7 1,330,231 + +0.7 1,330,231 + +0.9 1,330,231 + -1.2 1,330,232 - -1.1 1,330,232 - +1.0 1,330,232 - -0.4 1,330,263 - -0.9 1,330,275 + +2.2 1,330,275 + -0.0 1,330,332 + -1.4
Or see this region's nucleotide sequence