Strain Fitness in Pseudomonas putida KT2440 around PP_4266

Experiment: 2-Piperidinone 3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Piperidinone 3 vol%
4,850,131	+				-0.6
4,850,131	+				-0.0
4,850,131	+				+0.3
4,850,131	+				-0.3
4,850,131	+				-0.3
4,850,132	-				-0.6
4,850,132	-				+0.2
4,850,132	-				-0.2
4,850,208	-				-0.0
4,850,226	+				-0.3
4,850,226	+				+0.7
4,850,227	-				-0.5
4,850,232	+				-0.1
4,850,233	-				-1.4
4,850,239	+				-1.1
4,850,239	+				+0.1
4,850,239	+				-0.2
4,850,459	+		PP_4265	0.26	-2.0
4,850,466	+		PP_4265	0.27	+0.1
4,850,670	+		PP_4265	0.54	+1.2
4,850,671	-		PP_4265	0.55	+0.8
4,850,671	-		PP_4265	0.55	-0.5
4,850,861	+		PP_4265	0.80	+1.9
4,850,861	+		PP_4265	0.80	-0.8
4,850,861	+		PP_4265	0.80	+1.0
4,850,862	-		PP_4265	0.81	-0.6
4,850,877	+		PP_4265	0.83	-0.3
4,851,015	+				+0.0
4,851,024	+				+1.3
4,851,024	+				-1.2
4,851,024	+				+0.1
4,851,025	-				-0.1
4,851,025	-				+0.5
4,851,143	+		PP_4266	0.15	-0.6
4,851,177	+		PP_4266	0.21	+0.9
4,851,178	-		PP_4266	0.21	+0.6
4,851,178	-		PP_4266	0.21	-0.4
4,851,349	-		PP_4266	0.53	-0.2
4,851,440	+		PP_4266	0.69	+0.7
4,851,440	+		PP_4266	0.69	+0.3
4,851,449	+		PP_4266	0.71	-0.4
4,851,450	-		PP_4266	0.71	-0.1
4,851,569	+				+0.5
4,851,569	+				-0.1
4,851,570	-				+0.4
4,851,570	-				-0.1
4,851,570	-				+0.5
4,851,570	-				-0.3
4,851,604	-				-0.6
4,851,604	-				-0.1
4,851,659	-				+1.2
4,851,867	-		PP_4267	0.23	-0.7
4,851,867	-		PP_4267	0.23	-0.2
4,851,867	-		PP_4267	0.23	-0.1
4,852,055	+		PP_4267	0.54	-0.4
4,852,055	+		PP_4267	0.54	-0.9
4,852,055	+		PP_4267	0.54	+0.1
4,852,055	+		PP_4267	0.54	+0.8
4,852,055	+		PP_4267	0.54	-0.4
4,852,055	+		PP_4267	0.54	+0.9
4,852,056	-		PP_4267	0.55	+0.9
4,852,056	-		PP_4267	0.55	-0.8
4,852,351	+				-1.4
4,852,351	+				-1.1
4,852,364	-				+0.4
4,852,365	+				+0.3