Strain Fitness in Pseudomonas putida KT2440 around PP_3622

Experiment: 2-Piperidinone 3 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3620 and PP_3621 are separated by 270 nucleotidesPP_3621 and PP_3622 overlap by 1 nucleotidesPP_3622 and PP_3623 are separated by 18 nucleotides PP_3620: PP_3620 - cofactor of beta-methylthiolation of ribosomal protein S12, at 4,114,399 to 4,116,585 _3620 PP_3621: PP_3621 - vanillin dehydrogenase, iorA-like component (from data), at 4,116,856 to 4,117,311 _3621 PP_3622: PP_3622 - vanillin dehydrogenase, iorB-like component (from data), at 4,117,311 to 4,119,566 _3622 PP_3623: PP_3623 - vanillin dehydrogenase, cytochrome c component (from data), at 4,119,585 to 4,120,928 _3623 Position (kb) 4117 4118 4119 4120Strain fitness (log2 ratio) -2 -1 0 1 2at 4116.339 kb on - strand, within PP_3620at 4116.397 kb on - strandat 4116.413 kb on + strandat 4116.414 kb on - strandat 4116.428 kb on + strandat 4116.505 kb on - strandat 4116.593 kb on + strandat 4116.704 kb on - strandat 4116.717 kb on - strandat 4116.717 kb on - strandat 4116.775 kb on + strandat 4116.801 kb on + strandat 4116.801 kb on + strandat 4116.801 kb on + strandat 4116.802 kb on - strandat 4116.802 kb on - strandat 4116.817 kb on - strandat 4116.863 kb on + strandat 4116.883 kb on + strandat 4116.883 kb on + strandat 4116.884 kb on - strandat 4116.884 kb on - strandat 4116.958 kb on + strand, within PP_3621at 4116.958 kb on + strand, within PP_3621at 4116.958 kb on + strand, within PP_3621at 4116.958 kb on + strand, within PP_3621at 4116.958 kb on + strand, within PP_3621at 4116.959 kb on - strand, within PP_3621at 4116.959 kb on - strand, within PP_3621at 4117.258 kb on + strand, within PP_3621at 4117.258 kb on + strand, within PP_3621at 4117.258 kb on + strand, within PP_3621at 4117.259 kb on - strand, within PP_3621at 4117.423 kb on + strandat 4117.423 kb on + strandat 4117.423 kb on + strandat 4117.559 kb on + strand, within PP_3622at 4117.559 kb on + strand, within PP_3622at 4117.560 kb on - strand, within PP_3622at 4117.669 kb on - strand, within PP_3622at 4117.669 kb on - strand, within PP_3622at 4117.728 kb on + strand, within PP_3622at 4117.729 kb on - strand, within PP_3622at 4117.802 kb on - strand, within PP_3622at 4117.820 kb on + strandat 4117.832 kb on + strand, within PP_3622at 4117.837 kb on + strand, within PP_3622at 4117.837 kb on + strand, within PP_3622at 4117.837 kb on + strand, within PP_3622at 4117.837 kb on + strand, within PP_3622at 4117.837 kb on + strand, within PP_3622at 4117.837 kb on + strand, within PP_3622at 4117.837 kb on + strand, within PP_3622at 4117.837 kb on + strand, within PP_3622at 4117.837 kb on + strand, within PP_3622at 4117.838 kb on - strand, within PP_3622at 4117.838 kb on - strand, within PP_3622at 4117.838 kb on - strand, within PP_3622at 4117.838 kb on - strand, within PP_3622at 4117.838 kb on - strand, within PP_3622at 4117.838 kb on - strand, within PP_3622at 4117.840 kb on + strand, within PP_3622at 4117.840 kb on + strand, within PP_3622at 4117.840 kb on + strand, within PP_3622at 4117.840 kb on + strand, within PP_3622at 4117.840 kb on + strand, within PP_3622at 4117.840 kb on + strand, within PP_3622at 4117.840 kb on + strand, within PP_3622at 4117.841 kb on - strand, within PP_3622at 4117.841 kb on - strand, within PP_3622at 4117.844 kb on + strand, within PP_3622at 4117.845 kb on - strand, within PP_3622at 4117.969 kb on + strand, within PP_3622at 4118.013 kb on + strand, within PP_3622at 4118.014 kb on - strand, within PP_3622at 4118.014 kb on - strand, within PP_3622at 4118.132 kb on - strand, within PP_3622at 4118.132 kb on - strand, within PP_3622at 4118.132 kb on - strand, within PP_3622at 4118.132 kb on - strand, within PP_3622at 4118.391 kb on + strand, within PP_3622at 4118.392 kb on - strand, within PP_3622at 4118.403 kb on + strand, within PP_3622at 4118.598 kb on + strand, within PP_3622at 4118.666 kb on + strand, within PP_3622at 4118.667 kb on - strand, within PP_3622at 4118.702 kb on - strand, within PP_3622at 4118.702 kb on - strand, within PP_3622at 4118.702 kb on - strand, within PP_3622at 4118.868 kb on + strand, within PP_3622at 4118.868 kb on + strand, within PP_3622at 4118.901 kb on + strand, within PP_3622at 4118.902 kb on - strand, within PP_3622at 4118.929 kb on - strand, within PP_3622at 4118.945 kb on + strand, within PP_3622at 4118.946 kb on - strand, within PP_3622at 4118.946 kb on - strand, within PP_3622at 4118.968 kb on - strand, within PP_3622at 4119.343 kb on - strandat 4119.372 kb on + strandat 4119.372 kb on + strandat 4119.660 kb on + strandat 4119.660 kb on + strandat 4119.660 kb on + strandat 4119.661 kb on - strandat 4119.741 kb on + strand, within PP_3623at 4119.741 kb on + strand, within PP_3623at 4119.777 kb on - strand, within PP_3623at 4119.777 kb on - strand, within PP_3623at 4119.885 kb on + strand, within PP_3623at 4119.885 kb on + strand, within PP_3623at 4119.885 kb on + strand, within PP_3623at 4119.886 kb on - strand, within PP_3623at 4120.008 kb on + strand, within PP_3623at 4120.180 kb on - strand, within PP_3623at 4120.180 kb on - strand, within PP_3623at 4120.182 kb on - strand, within PP_3623at 4120.217 kb on + strand, within PP_3623at 4120.302 kb on + strand, within PP_3623at 4120.302 kb on + strand, within PP_3623at 4120.303 kb on - strand, within PP_3623at 4120.303 kb on - strand, within PP_3623at 4120.303 kb on - strand, within PP_3623at 4120.303 kb on - strand, within PP_3623at 4120.303 kb on - strand, within PP_3623at 4120.405 kb on + strand, within PP_3623at 4120.405 kb on + strand, within PP_3623at 4120.405 kb on + strand, within PP_3623at 4120.405 kb on + strand, within PP_3623at 4120.405 kb on + strand, within PP_3623at 4120.405 kb on + strand, within PP_3623at 4120.406 kb on - strand, within PP_3623at 4120.406 kb on - strand, within PP_3623at 4120.406 kb on - strand, within PP_3623at 4120.406 kb on - strand, within PP_3623at 4120.407 kb on + strand, within PP_3623at 4120.407 kb on + strand, within PP_3623at 4120.407 kb on + strand, within PP_3623at 4120.407 kb on + strand, within PP_3623at 4120.408 kb on - strand, within PP_3623at 4120.408 kb on - strand, within PP_3623at 4120.408 kb on - strand, within PP_3623

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Piperidinone 3 vol%
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4,116,339 - PP_3620 0.89 -0.2
4,116,397 - -2.1
4,116,413 + +0.0
4,116,414 - +1.7
4,116,428 + -1.1
4,116,505 - +0.6
4,116,593 + -0.5
4,116,704 - +0.4
4,116,717 - +1.3
4,116,717 - +0.5
4,116,775 + +0.4
4,116,801 + +1.0
4,116,801 + -1.0
4,116,801 + -1.1
4,116,802 - +0.3
4,116,802 - +0.3
4,116,817 - -0.6
4,116,863 + +1.5
4,116,883 + -0.0
4,116,883 + -0.0
4,116,884 - -0.5
4,116,884 - +0.5
4,116,958 + PP_3621 0.22 +0.3
4,116,958 + PP_3621 0.22 +0.0
4,116,958 + PP_3621 0.22 +0.9
4,116,958 + PP_3621 0.22 +0.2
4,116,958 + PP_3621 0.22 -0.2
4,116,959 - PP_3621 0.23 -1.3
4,116,959 - PP_3621 0.23 +0.5
4,117,258 + PP_3621 0.88 +0.2
4,117,258 + PP_3621 0.88 +1.2
4,117,258 + PP_3621 0.88 -0.1
4,117,259 - PP_3621 0.88 +0.2
4,117,423 + +0.8
4,117,423 + +1.0
4,117,423 + -1.3
4,117,559 + PP_3622 0.11 +0.5
4,117,559 + PP_3622 0.11 -1.1
4,117,560 - PP_3622 0.11 -0.5
4,117,669 - PP_3622 0.16 -0.5
4,117,669 - PP_3622 0.16 +0.1
4,117,728 + PP_3622 0.18 +0.5
4,117,729 - PP_3622 0.19 -0.5
4,117,802 - PP_3622 0.22 -0.2
4,117,820 + -0.2
4,117,832 + PP_3622 0.23 +1.0
4,117,837 + PP_3622 0.23 +0.3
4,117,837 + PP_3622 0.23 -0.1
4,117,837 + PP_3622 0.23 +0.3
4,117,837 + PP_3622 0.23 -0.7
4,117,837 + PP_3622 0.23 +0.2
4,117,837 + PP_3622 0.23 +1.6
4,117,837 + PP_3622 0.23 -0.5
4,117,837 + PP_3622 0.23 +0.4
4,117,837 + PP_3622 0.23 +0.3
4,117,838 - PP_3622 0.23 -0.5
4,117,838 - PP_3622 0.23 +0.3
4,117,838 - PP_3622 0.23 +0.4
4,117,838 - PP_3622 0.23 +1.2
4,117,838 - PP_3622 0.23 +0.9
4,117,838 - PP_3622 0.23 +1.1
4,117,840 + PP_3622 0.23 -0.1
4,117,840 + PP_3622 0.23 +2.2
4,117,840 + PP_3622 0.23 +0.4
4,117,840 + PP_3622 0.23 -0.4
4,117,840 + PP_3622 0.23 +0.5
4,117,840 + PP_3622 0.23 +0.4
4,117,840 + PP_3622 0.23 +0.2
4,117,841 - PP_3622 0.23 +0.3
4,117,841 - PP_3622 0.23 +0.1
4,117,844 + PP_3622 0.24 -1.0
4,117,845 - PP_3622 0.24 +1.3
4,117,969 + PP_3622 0.29 -0.4
4,118,013 + PP_3622 0.31 -0.7
4,118,014 - PP_3622 0.31 -0.7
4,118,014 - PP_3622 0.31 -0.3
4,118,132 - PP_3622 0.36 +0.1
4,118,132 - PP_3622 0.36 -0.3
4,118,132 - PP_3622 0.36 -0.6
4,118,132 - PP_3622 0.36 -0.0
4,118,391 + PP_3622 0.48 +0.6
4,118,392 - PP_3622 0.48 -0.2
4,118,403 + PP_3622 0.48 -0.3
4,118,598 + PP_3622 0.57 -0.6
4,118,666 + PP_3622 0.60 -0.1
4,118,667 - PP_3622 0.60 +0.6
4,118,702 - PP_3622 0.62 +0.8
4,118,702 - PP_3622 0.62 -0.2
4,118,702 - PP_3622 0.62 +0.5
4,118,868 + PP_3622 0.69 +0.1
4,118,868 + PP_3622 0.69 -0.4
4,118,901 + PP_3622 0.70 +1.0
4,118,902 - PP_3622 0.71 -0.4
4,118,929 - PP_3622 0.72 -0.7
4,118,945 + PP_3622 0.72 +0.4
4,118,946 - PP_3622 0.72 -0.5
4,118,946 - PP_3622 0.72 +1.3
4,118,968 - PP_3622 0.73 +1.7
4,119,343 - -1.0
4,119,372 + +0.3
4,119,372 + -0.5
4,119,660 + -0.6
4,119,660 + +0.4
4,119,660 + +0.9
4,119,661 - +0.1
4,119,741 + PP_3623 0.12 -1.0
4,119,741 + PP_3623 0.12 -0.7
4,119,777 - PP_3623 0.14 +0.7
4,119,777 - PP_3623 0.14 -1.5
4,119,885 + PP_3623 0.22 +0.7
4,119,885 + PP_3623 0.22 +0.5
4,119,885 + PP_3623 0.22 +0.3
4,119,886 - PP_3623 0.22 -0.4
4,120,008 + PP_3623 0.31 +0.3
4,120,180 - PP_3623 0.44 -0.1
4,120,180 - PP_3623 0.44 +0.7
4,120,182 - PP_3623 0.44 -0.3
4,120,217 + PP_3623 0.47 +0.2
4,120,302 + PP_3623 0.53 -0.8
4,120,302 + PP_3623 0.53 +0.5
4,120,303 - PP_3623 0.53 +0.6
4,120,303 - PP_3623 0.53 -0.0
4,120,303 - PP_3623 0.53 +2.1
4,120,303 - PP_3623 0.53 +0.7
4,120,303 - PP_3623 0.53 +0.2
4,120,405 + PP_3623 0.61 -0.8
4,120,405 + PP_3623 0.61 +0.2
4,120,405 + PP_3623 0.61 +0.8
4,120,405 + PP_3623 0.61 +0.0
4,120,405 + PP_3623 0.61 +0.4
4,120,405 + PP_3623 0.61 +0.3
4,120,406 - PP_3623 0.61 +0.5
4,120,406 - PP_3623 0.61 +0.1
4,120,406 - PP_3623 0.61 -0.3
4,120,406 - PP_3623 0.61 +0.1
4,120,407 + PP_3623 0.61 -0.9
4,120,407 + PP_3623 0.61 +0.0
4,120,407 + PP_3623 0.61 +0.3
4,120,407 + PP_3623 0.61 -0.7
4,120,408 - PP_3623 0.61 -0.1
4,120,408 - PP_3623 0.61 +0.3
4,120,408 - PP_3623 0.61 -0.6

Or see this region's nucleotide sequence