Strain Fitness in Pseudomonas putida KT2440 around PP_2663

Experiment: 2-Piperidinone 3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Piperidinone 3 vol%
3,049,205	-		PP_2662	0.31	+1.1
3,049,396	-		PP_2662	0.47	-0.7
3,049,411	+		PP_2662	0.48	-0.1
3,049,412	-		PP_2662	0.48	+0.3
3,049,412	-		PP_2662	0.48	-0.1
3,049,436	+		PP_2662	0.50	-0.1
3,049,437	-		PP_2662	0.50	-0.3
3,049,537	+		PP_2662	0.59	+0.3
3,049,567	+		PP_2662	0.61	+0.1
3,049,567	+		PP_2662	0.61	-0.5
3,049,567	+		PP_2662	0.61	+0.2
3,049,567	+		PP_2662	0.61	+1.4
3,049,589	-		PP_2662	0.63	+0.1
3,049,605	+		PP_2662	0.64	+0.0
3,049,606	-		PP_2662	0.64	+0.8
3,049,606	-		PP_2662	0.64	-0.2
3,049,606	-		PP_2662	0.64	+0.1
3,049,792	+		PP_2662	0.80	+2.0
3,049,792	+		PP_2662	0.80	-0.3
3,049,792	+		PP_2662	0.80	+0.5
3,049,793	-		PP_2662	0.80	+0.9
3,049,793	-		PP_2662	0.80	+0.0
3,049,825	+		PP_2662	0.83	+0.4
3,049,826	-		PP_2662	0.83	+0.6
3,049,826	-		PP_2662	0.83	-0.7
3,049,939	+				+0.1
3,049,940	-				-0.1
3,049,995	+				-0.3
3,049,996	-				-1.3
3,050,104	-				+0.5
3,050,104	-				-0.3
3,050,184	-				+0.5
3,050,543	+		PP_2663	0.32	-0.4
3,050,706	+		PP_2663	0.46	-0.5
3,050,706	+		PP_2663	0.46	-1.0
3,050,707	-		PP_2663	0.46	-0.3
3,050,707	-		PP_2663	0.46	-0.9
3,050,707	-		PP_2663	0.46	-0.7
3,050,710	-		PP_2663	0.46	+0.4
3,050,710	-		PP_2663	0.46	+0.4
3,050,886	+		PP_2663	0.62	-0.3
3,050,973	+		PP_2663	0.69	-0.6
3,050,973	+		PP_2663	0.69	-0.8
3,050,974	-		PP_2663	0.69	+0.3
3,050,974	-		PP_2663	0.69	-0.2
3,050,976	+		PP_2663	0.69	-0.4
3,050,976	+		PP_2663	0.69	-0.5
3,050,976	+		PP_2663	0.69	-0.4
3,050,977	-		PP_2663	0.69	-0.6
3,050,977	-		PP_2663	0.69	-0.0
3,051,024	+		PP_2663	0.73	+0.3
3,051,384	+				-1.7
3,051,385	-				+0.7
3,051,443	-				+0.0
3,051,482	+				+1.3
3,051,649	+		PP_2664	0.18	-0.7
3,051,682	+				+0.7
3,051,683	-		PP_2664	0.20	+0.4
3,051,683	-		PP_2664	0.20	+0.3
3,051,683	-		PP_2664	0.20	+0.1
3,051,683	-		PP_2664	0.20	+0.4
3,051,745	+		PP_2664	0.23	-0.1
3,051,763	+		PP_2664	0.24	+0.3
3,051,764	-		PP_2664	0.24	-0.2
3,051,764	-		PP_2664	0.24	+0.9
3,051,819	+		PP_2664	0.27	+0.6
3,051,820	-		PP_2664	0.27	+1.5
3,051,839	-		PP_2664	0.28	+0.2
3,051,839	-		PP_2664	0.28	-0.2
3,051,853	+		PP_2664	0.29	+0.5
3,051,892	-		PP_2664	0.31	-0.3
3,051,956	-		PP_2664	0.34	+0.1
3,052,276	-		PP_2664	0.51	-0.2