Strain Fitness in Pseudomonas putida KT2440 around PP_0939

Experiment: 2-Piperidinone 3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Piperidinone 3 vol%
1,083,208	-		PP_0938	0.75	+0.0
1,083,208	-		PP_0938	0.75	+1.0
1,083,394	+		PP_0938	0.80	-0.6
1,083,394	+		PP_0938	0.80	+0.4
1,083,395	-		PP_0938	0.80	+0.4
1,083,399	+		PP_0938	0.80	+0.1
1,083,400	-		PP_0938	0.80	+2.8
1,083,400	-		PP_0938	0.80	-2.0
1,083,450	+				+0.5
1,083,529	+		PP_0938	0.83	+1.0
1,083,529	+		PP_0938	0.83	+3.3
1,083,530	-		PP_0938	0.83	-0.1
1,083,826	+				+2.7
1,083,826	+				+2.3
1,083,827	-				-1.3
1,083,868	+				-1.1
1,083,889	-				+3.3
1,083,889	-				-1.5
1,084,128	+				-2.1
1,084,128	+				-1.9
1,084,128	+				+0.5
1,084,128	+				-1.6
1,084,128	+				+2.1
1,084,129	-				+0.0
1,084,129	-				-0.6
1,084,172	-				-0.6
1,084,172	-				+0.3
1,084,512	+				-0.3
1,084,582	-		PP_0939	0.48	-0.8
1,084,582	-		PP_0939	0.48	-0.5
1,084,613	+		PP_0939	0.51	-1.0
1,084,614	-		PP_0939	0.51	+0.6
1,084,648	-		PP_0939	0.55	-0.3
1,084,672	-		PP_0939	0.58	+0.2
1,084,672	-		PP_0939	0.58	-0.8
1,084,672	-		PP_0939	0.58	+0.1
1,084,724	+		PP_0939	0.64	-1.5
1,084,725	-		PP_0939	0.64	-0.7
1,084,791	+		PP_0939	0.72	-1.6
1,084,791	+		PP_0939	0.72	+0.7
1,084,909	+		PP_0939	0.86	-1.9
1,084,910	-		PP_0939	0.86	-0.5
1,085,015	+				+0.2
1,085,016	-				+0.2
1,085,029	+				-1.1
1,085,043	+				+0.6
1,085,044	-				-0.8
1,085,150	+				+0.4
1,085,151	-				+0.0
1,085,393	+		PP_0940	0.25	+1.0
1,085,393	+		PP_0940	0.25	-0.5
1,085,394	-		PP_0940	0.25	+0.1
1,085,394	-		PP_0940	0.25	+0.1
1,085,394	-		PP_0940	0.25	-0.5
1,085,396	-		PP_0940	0.25	+0.6
1,085,449	+		PP_0940	0.29	-1.0
1,085,596	-		PP_0940	0.39	+0.2
1,085,675	-		PP_0940	0.45	-1.1
1,086,014	+		PP_0940	0.68	-0.3
1,086,015	-		PP_0940	0.68	+0.2
1,086,015	-		PP_0940	0.68	+0.2