Experiment: 2-Piperidinone 3 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0656 and PP_0657 overlap by 4 nucleotides PP_0657 and PP_0658 are separated by 61 nucleotides PP_0658 and PP_0659 are separated by 167 nucleotides
PP_0656: PP_0656 - putative Amino acid ABC transporter, permease protein, at 763,699 to 764,520
_0656
PP_0657: PP_0657 - putative Amino acid ABC transporter, periplasmic amino acid-binding protein, at 764,517 to 765,344
_0657
PP_0658: PP_0658 - Homocysteine S-methyltransferase family protein, at 765,406 to 766,341
_0658
PP_0659: PP_0659 - Cystathionine gamma-synthase, at 766,509 to 767,780
_0659
Position (kb) 765
766
767 Strain fitness (log2 ratio) -2
-1
0
1 at 764.527 kb on - strand at 764.601 kb on + strand, within PP_0657 at 764.601 kb on + strand, within PP_0657 at 764.660 kb on - strand, within PP_0657 at 764.729 kb on + strand, within PP_0657 at 764.730 kb on - strand, within PP_0657 at 764.797 kb on + strand, within PP_0657 at 764.798 kb on - strand, within PP_0657 at 764.878 kb on + strand, within PP_0657 at 764.879 kb on - strand, within PP_0657 at 764.887 kb on + strand, within PP_0657 at 764.989 kb on + strand, within PP_0657 at 764.993 kb on - strand, within PP_0657 at 764.993 kb on - strand, within PP_0657 at 765.303 kb on + strand at 765.303 kb on + strand at 765.304 kb on - strand at 765.304 kb on - strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.341 kb on - strand at 765.341 kb on - strand at 765.341 kb on - strand at 765.344 kb on + strand at 765.345 kb on - strand at 765.345 kb on - strand at 765.345 kb on - strand at 765.351 kb on + strand at 765.352 kb on - strand at 765.376 kb on + strand at 765.381 kb on - strand at 765.383 kb on + strand at 765.384 kb on - strand at 765.404 kb on + strand at 765.440 kb on - strand at 765.441 kb on + strand at 765.441 kb on + strand at 765.441 kb on + strand at 765.442 kb on - strand at 765.462 kb on - strand at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.629 kb on + strand, within PP_0658 at 765.629 kb on + strand, within PP_0658 at 765.720 kb on + strand, within PP_0658 at 765.721 kb on - strand, within PP_0658 at 766.056 kb on + strand, within PP_0658 at 766.056 kb on + strand, within PP_0658 at 766.057 kb on - strand, within PP_0658 at 766.057 kb on - strand, within PP_0658 at 766.390 kb on - strand at 766.447 kb on + strand at 766.448 kb on - strand at 766.448 kb on - strand at 766.448 kb on - strand at 766.449 kb on + strand at 766.449 kb on + strand at 766.449 kb on + strand at 766.450 kb on - strand at 766.450 kb on - strand at 766.450 kb on - strand at 766.450 kb on - strand at 766.480 kb on + strand at 766.481 kb on - strand at 766.481 kb on - strand at 766.585 kb on + strand at 766.585 kb on + strand at 766.585 kb on + strand at 766.586 kb on - strand at 766.586 kb on - strand at 766.586 kb on - strand at 766.586 kb on - strand at 766.596 kb on + strand at 766.596 kb on + strand at 766.596 kb on + strand at 766.597 kb on - strand at 766.597 kb on - strand at 766.597 kb on - strand at 766.635 kb on + strand at 766.636 kb on - strand at 766.636 kb on - strand at 766.642 kb on - strand, within PP_0659 at 766.642 kb on - strand, within PP_0659 at 766.662 kb on + strand, within PP_0659 at 766.663 kb on - strand, within PP_0659 at 766.663 kb on - strand, within PP_0659 at 766.698 kb on + strand, within PP_0659 at 766.699 kb on - strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.864 kb on - strand, within PP_0659 at 766.864 kb on - strand, within PP_0659 at 766.864 kb on - strand, within PP_0659 at 766.932 kb on - strand, within PP_0659 at 766.986 kb on + strand, within PP_0659 at 766.986 kb on + strand, within PP_0659 at 766.987 kb on - strand, within PP_0659 at 767.291 kb on + strand, within PP_0659 at 767.291 kb on + strand, within PP_0659
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Piperidinone 3 vol% remove 764,527 - -0.8 764,601 + PP_0657 0.10 -0.7 764,601 + PP_0657 0.10 -0.1 764,660 - PP_0657 0.17 -0.6 764,729 + PP_0657 0.26 +0.5 764,730 - PP_0657 0.26 +1.5 764,797 + PP_0657 0.34 +0.5 764,798 - PP_0657 0.34 +1.4 764,878 + PP_0657 0.44 +0.4 764,879 - PP_0657 0.44 +1.0 764,887 + PP_0657 0.45 +0.0 764,989 + PP_0657 0.57 -1.4 764,993 - PP_0657 0.57 +0.3 764,993 - PP_0657 0.57 +0.8 765,303 + -0.2 765,303 + -0.5 765,304 - -0.2 765,304 - -0.5 765,340 + +0.5 765,340 + +0.3 765,340 + +0.5 765,340 + +0.0 765,340 + +0.4 765,340 + -0.1 765,341 - +0.0 765,341 - +0.3 765,341 - +0.0 765,344 + +0.3 765,345 - +0.5 765,345 - +0.5 765,345 - -1.0 765,351 + -1.1 765,352 - +0.0 765,376 + -0.8 765,381 - -0.1 765,383 + +0.2 765,384 - +0.6 765,404 + -0.1 765,440 - -0.8 765,441 + -0.7 765,441 + -0.1 765,441 + -0.0 765,442 - -0.3 765,462 - -0.7 765,622 + PP_0658 0.23 -0.3 765,622 + PP_0658 0.23 -1.0 765,622 + PP_0658 0.23 +0.2 765,622 + PP_0658 0.23 -0.7 765,622 + PP_0658 0.23 -0.1 765,622 + PP_0658 0.23 -0.8 765,623 - PP_0658 0.23 -2.0 765,623 - PP_0658 0.23 -0.0 765,623 - PP_0658 0.23 -0.9 765,623 - PP_0658 0.23 -0.5 765,623 - PP_0658 0.23 +1.5 765,623 - PP_0658 0.23 -0.5 765,623 - PP_0658 0.23 +0.2 765,623 - PP_0658 0.23 +0.0 765,623 - PP_0658 0.23 +0.9 765,623 - PP_0658 0.23 -0.6 765,623 - PP_0658 0.23 -1.3 765,623 - PP_0658 0.23 +1.3 765,623 - PP_0658 0.23 +0.5 765,629 + PP_0658 0.24 -0.1 765,629 + PP_0658 0.24 +0.0 765,720 + PP_0658 0.34 +0.4 765,721 - PP_0658 0.34 -0.1 766,056 + PP_0658 0.69 -1.2 766,056 + PP_0658 0.69 -1.4 766,057 - PP_0658 0.70 -0.1 766,057 - PP_0658 0.70 -0.3 766,390 - +0.0 766,447 + -0.5 766,448 - +1.1 766,448 - +0.6 766,448 - +0.0 766,449 + -0.5 766,449 + +0.1 766,449 + -0.3 766,450 - +0.4 766,450 - -0.0 766,450 - +1.1 766,450 - -0.2 766,480 + +0.1 766,481 - -1.1 766,481 - -2.4 766,585 + +1.1 766,585 + -0.3 766,585 + +0.6 766,586 - +0.2 766,586 - -0.3 766,586 - -0.5 766,586 - -0.2 766,596 + +0.4 766,596 + +0.1 766,596 + +0.5 766,597 - -0.2 766,597 - -0.0 766,597 - -0.3 766,635 + +0.4 766,636 - -0.2 766,636 - -0.7 766,642 - PP_0659 0.10 -0.1 766,642 - PP_0659 0.10 -0.8 766,662 + PP_0659 0.12 -0.2 766,663 - PP_0659 0.12 -0.1 766,663 - PP_0659 0.12 -0.6 766,698 + PP_0659 0.15 -0.1 766,699 - PP_0659 0.15 -2.7 766,863 + PP_0659 0.28 -0.7 766,863 + PP_0659 0.28 -1.0 766,863 + PP_0659 0.28 -0.0 766,863 + PP_0659 0.28 +0.2 766,863 + PP_0659 0.28 +0.1 766,864 - PP_0659 0.28 -0.3 766,864 - PP_0659 0.28 -0.2 766,864 - PP_0659 0.28 -1.4 766,932 - PP_0659 0.33 +0.9 766,986 + PP_0659 0.38 -0.5 766,986 + PP_0659 0.38 +0.4 766,987 - PP_0659 0.38 -0.7 767,291 + PP_0659 0.61 +0.7 767,291 + PP_0659 0.61 +1.4
Or see this region's nucleotide sequence