Strain Fitness in Pseudomonas putida KT2440 around PP_0224

Experiment: 2-Piperidinone 3 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0223 and PP_0224 are separated by 96 nucleotidesPP_0224 and PP_0225 are separated by 313 nucleotides PP_0223: PP_0223 - Monooxygenase, DszC family, at 275,947 to 277,167 _0223 PP_0224: PP_0224 - Monooxygenase, DszC family, at 277,264 to 278,505 _0224 PP_0225: PP_0225 - sulfur compound ABC transporter - ATP-binding subunit, at 278,819 to 279,577 _0225 Position (kb) 277 278 279Strain fitness (log2 ratio) -2 -1 0 1 2at 276.384 kb on - strand, within PP_0223at 276.399 kb on + strand, within PP_0223at 276.400 kb on - strand, within PP_0223at 276.500 kb on + strand, within PP_0223at 276.501 kb on - strand, within PP_0223at 276.501 kb on - strand, within PP_0223at 276.613 kb on + strand, within PP_0223at 276.613 kb on + strand, within PP_0223at 276.613 kb on + strand, within PP_0223at 276.614 kb on + strand, within PP_0223at 276.614 kb on - strand, within PP_0223at 276.614 kb on - strand, within PP_0223at 276.614 kb on - strandat 276.614 kb on - strand, within PP_0223at 276.657 kb on - strand, within PP_0223at 276.657 kb on - strand, within PP_0223at 276.657 kb on - strand, within PP_0223at 276.657 kb on - strand, within PP_0223at 276.657 kb on - strand, within PP_0223at 276.657 kb on - strand, within PP_0223at 276.657 kb on - strand, within PP_0223at 276.675 kb on - strand, within PP_0223at 276.803 kb on + strand, within PP_0223at 277.116 kb on + strandat 277.116 kb on + strandat 277.116 kb on + strandat 277.117 kb on - strandat 277.117 kb on - strandat 277.117 kb on - strandat 277.117 kb on - strandat 277.117 kb on - strandat 277.117 kb on - strandat 277.122 kb on + strandat 277.122 kb on + strandat 277.123 kb on - strandat 277.123 kb on - strandat 277.204 kb on + strandat 277.204 kb on + strandat 277.205 kb on - strandat 277.307 kb on + strandat 277.618 kb on + strand, within PP_0224at 277.618 kb on + strand, within PP_0224at 277.618 kb on + strand, within PP_0224at 277.619 kb on - strand, within PP_0224at 277.622 kb on + strand, within PP_0224at 277.622 kb on + strand, within PP_0224at 277.622 kb on + strand, within PP_0224at 277.623 kb on - strand, within PP_0224at 277.623 kb on - strand, within PP_0224at 277.623 kb on - strand, within PP_0224at 277.623 kb on - strand, within PP_0224at 277.623 kb on - strand, within PP_0224at 277.658 kb on - strand, within PP_0224at 277.658 kb on - strand, within PP_0224at 277.948 kb on + strand, within PP_0224at 277.994 kb on + strand, within PP_0224at 277.995 kb on - strand, within PP_0224at 278.011 kb on + strand, within PP_0224at 278.012 kb on - strand, within PP_0224at 278.012 kb on - strand, within PP_0224at 278.434 kb on + strandat 278.476 kb on - strandat 278.591 kb on - strandat 278.594 kb on + strandat 278.656 kb on - strandat 278.753 kb on + strandat 278.782 kb on + strandat 278.782 kb on + strandat 278.783 kb on - strandat 278.783 kb on - strandat 278.866 kb on + strandat 278.867 kb on - strandat 279.035 kb on + strand, within PP_0225at 279.089 kb on + strand, within PP_0225at 279.089 kb on + strand, within PP_0225at 279.089 kb on + strand, within PP_0225at 279.090 kb on - strand, within PP_0225at 279.090 kb on - strand, within PP_0225at 279.090 kb on - strand, within PP_0225at 279.162 kb on + strand, within PP_0225at 279.385 kb on + strand, within PP_0225at 279.386 kb on - strand, within PP_0225at 279.399 kb on - strand, within PP_0225at 279.399 kb on - strand, within PP_0225

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Piperidinone 3 vol%
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276,384 - PP_0223 0.36 -0.2
276,399 + PP_0223 0.37 -0.5
276,400 - PP_0223 0.37 -0.1
276,500 + PP_0223 0.45 +0.6
276,501 - PP_0223 0.45 +0.0
276,501 - PP_0223 0.45 -0.3
276,613 + PP_0223 0.55 +0.3
276,613 + PP_0223 0.55 +0.4
276,613 + PP_0223 0.55 +0.4
276,614 + PP_0223 0.55 +1.9
276,614 - PP_0223 0.55 +1.0
276,614 - PP_0223 0.55 -1.0
276,614 - +1.9
276,614 - PP_0223 0.55 -1.6
276,657 - PP_0223 0.58 +0.2
276,657 - PP_0223 0.58 -0.8
276,657 - PP_0223 0.58 +0.8
276,657 - PP_0223 0.58 -0.9
276,657 - PP_0223 0.58 +0.2
276,657 - PP_0223 0.58 -0.5
276,657 - PP_0223 0.58 +0.1
276,675 - PP_0223 0.60 -0.0
276,803 + PP_0223 0.70 +0.3
277,116 + +0.4
277,116 + -0.2
277,116 + -0.9
277,117 - -0.2
277,117 - +0.8
277,117 - -0.9
277,117 - -0.4
277,117 - -0.2
277,117 - -0.1
277,122 + +0.4
277,122 + -0.0
277,123 - +1.0
277,123 - +0.4
277,204 + +0.8
277,204 + -0.6
277,205 - -1.0
277,307 + -0.5
277,618 + PP_0224 0.29 -0.3
277,618 + PP_0224 0.29 -0.9
277,618 + PP_0224 0.29 +0.4
277,619 - PP_0224 0.29 +1.0
277,622 + PP_0224 0.29 +0.5
277,622 + PP_0224 0.29 -0.2
277,622 + PP_0224 0.29 -0.4
277,623 - PP_0224 0.29 +0.0
277,623 - PP_0224 0.29 +0.1
277,623 - PP_0224 0.29 -2.4
277,623 - PP_0224 0.29 -0.1
277,623 - PP_0224 0.29 -0.9
277,658 - PP_0224 0.32 -1.9
277,658 - PP_0224 0.32 -1.7
277,948 + PP_0224 0.55 -1.1
277,994 + PP_0224 0.59 -1.6
277,995 - PP_0224 0.59 -0.3
278,011 + PP_0224 0.60 -1.1
278,012 - PP_0224 0.60 -0.5
278,012 - PP_0224 0.60 -1.6
278,434 + -0.4
278,476 - +0.4
278,591 - -0.2
278,594 + -0.8
278,656 - +0.3
278,753 + +0.2
278,782 + -0.7
278,782 + +0.2
278,783 - -0.3
278,783 - +0.2
278,866 + -0.3
278,867 - -1.0
279,035 + PP_0225 0.28 +0.4
279,089 + PP_0225 0.36 +0.9
279,089 + PP_0225 0.36 -0.4
279,089 + PP_0225 0.36 +0.6
279,090 - PP_0225 0.36 -0.2
279,090 - PP_0225 0.36 +1.0
279,090 - PP_0225 0.36 +0.5
279,162 + PP_0225 0.45 -0.2
279,385 + PP_0225 0.75 -0.0
279,386 - PP_0225 0.75 -0.0
279,399 - PP_0225 0.76 -1.0
279,399 - PP_0225 0.76 +0.4

Or see this region's nucleotide sequence