Experiment: LB_plus_SM_buffer with phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF905 and GFF906 are separated by 3 nucleotides GFF906 and GFF907 are separated by 160 nucleotides GFF907 and GFF908 are separated by 10 nucleotides GFF908 and GFF909 overlap by 1 nucleotides GFF909 and GFF910 are separated by 22 nucleotides GFF910 and GFF911 are separated by 11 nucleotides
GFF905 - Soluble cytochrome b562, at 86,629 to 87,015
GFF905
GFF906 - FIG01047835: hypothetical protein, at 87,019 to 87,141
GFF906
GFF907 - FIG01045571: hypothetical protein, at 87,302 to 87,631
GFF907
GFF908 - FIG00628496: hypothetical protein, at 87,642 to 88,004
GFF908
GFF909 - FIG074102: hypothetical protein, at 88,004 to 88,306
GFF909
GFF910 - Putative inner membrane protein, at 88,329 to 89,105
GFF910
GFF911 - Putative inner membrane protein, at 89,117 to 89,761
GFF911
Position (kb) 88
89 Strain fitness (log2 ratio) -1
0
1 at 87.007 kb on + strand at 87.070 kb on - strand, within GFF906 at 87.202 kb on - strand at 87.273 kb on - strand at 87.366 kb on + strand, within GFF907 at 87.469 kb on + strand, within GFF907 at 87.629 kb on + strand at 87.653 kb on + strand at 87.834 kb on - strand, within GFF908 at 87.859 kb on - strand, within GFF908 at 87.948 kb on - strand, within GFF908 at 88.038 kb on + strand, within GFF909 at 88.038 kb on + strand, within GFF909 at 88.123 kb on + strand, within GFF909 at 88.128 kb on + strand, within GFF909 at 88.128 kb on + strand, within GFF909 at 88.136 kb on - strand, within GFF909 at 88.229 kb on + strand, within GFF909 at 88.230 kb on - strand, within GFF909 at 88.343 kb on - strand at 88.448 kb on + strand, within GFF910 at 88.688 kb on - strand, within GFF910 at 88.928 kb on + strand, within GFF910 at 89.207 kb on - strand, within GFF911 at 89.210 kb on + strand, within GFF911 at 89.211 kb on - strand, within GFF911 at 89.213 kb on + strand, within GFF911 at 89.213 kb on + strand, within GFF911 at 89.213 kb on + strand, within GFF911 at 89.213 kb on + strand, within GFF911 at 89.213 kb on + strand, within GFF911 at 89.213 kb on + strand, within GFF911 at 89.214 kb on - strand, within GFF911 at 89.214 kb on - strand, within GFF911 at 89.219 kb on + strand, within GFF911 at 89.237 kb on - strand, within GFF911
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with phi19h1_phage 15 MOI remove 87,007 + -0.7 87,070 - GFF906 0.41 +1.1 87,202 - +0.5 87,273 - +0.1 87,366 + GFF907 0.19 +1.0 87,469 + GFF907 0.51 +0.6 87,629 + +0.4 87,653 + +0.1 87,834 - GFF908 0.53 +0.2 87,859 - GFF908 0.60 +0.3 87,948 - GFF908 0.84 +0.2 88,038 + GFF909 0.11 -0.9 88,038 + GFF909 0.11 -0.5 88,123 + GFF909 0.39 -0.1 88,128 + GFF909 0.41 +0.5 88,128 + GFF909 0.41 -0.4 88,136 - GFF909 0.44 +1.3 88,229 + GFF909 0.74 -0.0 88,230 - GFF909 0.75 -0.0 88,343 - -0.0 88,448 + GFF910 0.15 -0.3 88,688 - GFF910 0.46 +0.2 88,928 + GFF910 0.77 +0.0 89,207 - GFF911 0.14 +0.5 89,210 + GFF911 0.14 +0.1 89,211 - GFF911 0.15 +1.0 89,213 + GFF911 0.15 +0.0 89,213 + GFF911 0.15 +1.3 89,213 + GFF911 0.15 -0.1 89,213 + GFF911 0.15 -0.3 89,213 + GFF911 0.15 +0.1 89,213 + GFF911 0.15 +0.8 89,214 - GFF911 0.15 -0.2 89,214 - GFF911 0.15 -0.7 89,219 + GFF911 0.16 +0.0 89,237 - GFF911 0.19 +0.7
Or see this region's nucleotide sequence