Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF795

Experiment: LB_plus_SM_buffer with phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF793 and GFF794 are separated by 504 nucleotidesGFF794 and GFF795 are separated by 2 nucleotidesGFF795 and GFF796 overlap by 4 nucleotidesGFF796 and GFF797 are separated by 291 nucleotides GFF793 - hypothetical protein, at 143,258 to 143,371 GFF793 GFF794 - Phage holin, at 143,876 to 144,220 GFF794 GFF795 - Phage lysin, 1,4-beta-N-acetylmuramidase (EC 3.2.1.17) or lysozyme, at 144,223 to 144,837 GFF795 GFF796 - Phage outer membrane lytic protein Rz; Endopeptidase (EC 3.4.-.-), at 144,834 to 145,319 GFF796 GFF797 - hypothetical protein, at 145,611 to 145,802 GFF797 Position (kb) 144 145Strain fitness (log2 ratio) -2 -1 0 1 2at 143.281 kb on - strand, within GFF793at 143.431 kb on - strandat 143.481 kb on - strandat 143.518 kb on + strandat 143.518 kb on + strandat 143.519 kb on - strandat 143.589 kb on + strandat 143.631 kb on - strandat 143.683 kb on + strandat 143.691 kb on + strandat 143.793 kb on + strandat 143.806 kb on - strandat 143.814 kb on - strandat 143.950 kb on - strand, within GFF794at 144.003 kb on - strand, within GFF794at 144.477 kb on + strand, within GFF795at 144.477 kb on + strand, within GFF795at 144.478 kb on - strand, within GFF795at 144.588 kb on + strand, within GFF795at 144.733 kb on + strand, within GFF795at 144.850 kb on + strandat 144.850 kb on + strandat 145.001 kb on + strand, within GFF796at 145.001 kb on + strand, within GFF796at 145.001 kb on + strand, within GFF796at 145.002 kb on - strand, within GFF796at 145.051 kb on - strand, within GFF796at 145.293 kb on + strandat 145.354 kb on + strandat 145.422 kb on + strandat 145.454 kb on - strandat 145.531 kb on + strandat 145.545 kb on - strandat 145.594 kb on - strandat 145.598 kb on + strandat 145.599 kb on - strandat 145.788 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with phi19h1_phage 15 MOI
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143,281 - GFF793 0.20 +2.3
143,431 - +0.5
143,481 - -0.2
143,518 + +0.4
143,518 + +0.1
143,519 - +0.6
143,589 + +0.7
143,631 - -0.1
143,683 + +0.5
143,691 + +0.6
143,793 + +0.1
143,806 - -0.6
143,814 - -0.5
143,950 - GFF794 0.21 -0.2
144,003 - GFF794 0.37 +0.0
144,477 + GFF795 0.41 -0.7
144,477 + GFF795 0.41 -0.2
144,478 - GFF795 0.41 -0.3
144,588 + GFF795 0.59 -1.0
144,733 + GFF795 0.83 +0.4
144,850 + +0.2
144,850 + -0.2
145,001 + GFF796 0.34 +0.8
145,001 + GFF796 0.34 -1.4
145,001 + GFF796 0.34 +0.2
145,002 - GFF796 0.35 -2.4
145,051 - GFF796 0.45 -0.2
145,293 + +0.5
145,354 + -0.3
145,422 + +0.2
145,454 - +0.5
145,531 + -1.1
145,545 - +0.4
145,594 - -1.2
145,598 + -0.2
145,599 - -0.2
145,788 - +0.2

Or see this region's nucleotide sequence