Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4628

Experiment: LB_plus_SM_buffer with phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4626 and GFF4627 are separated by 3 nucleotidesGFF4627 and GFF4628 are separated by 93 nucleotidesGFF4628 and GFF4629 are separated by 258 nucleotides GFF4626 - O-antigen export system permease protein RfbD, at 417,880 to 418,650 GFF4626 GFF4627 - O-antigen/lipopolysaccharide transport ATP-binding protein ABC transporter RfbE, at 418,654 to 419,364 GFF4627 GFF4628 - putative glycosyltransferase, at 419,458 to 421,236 GFF4628 GFF4629 - FIG01045205: hypothetical protein, at 421,495 to 422,262 GFF4629 Position (kb) 419 420 421 422Strain fitness (log2 ratio) -1 0 1at 418.900 kb on - strand, within GFF4627at 419.814 kb on + strand, within GFF4628at 420.577 kb on - strand, within GFF4628

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with phi19h1_phage 15 MOI
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418,900 - GFF4627 0.35 -1.3
419,814 + GFF4628 0.20 -0.4
420,577 - GFF4628 0.63 -0.7

Or see this region's nucleotide sequence