Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4605

Experiment: LB_plus_SM_buffer with phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4604 and GFF4605 are separated by 397 nucleotidesGFF4605 and GFF4606 are separated by 250 nucleotidesGFF4606 and GFF4607 overlap by 4 nucleotides GFF4604 - Ornithine decarboxylase (EC 4.1.1.17), at 393,923 to 396,121 GFF4604 GFF4605 - hypothetical protein, at 396,519 to 396,632 GFF4605 GFF4606 - sensor histidine kinase, at 396,883 to 397,560 GFF4606 GFF4607 - Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-), at 397,557 to 400,169 GFF4607 Position (kb) 396 397Strain fitness (log2 ratio) -1 0 1at 395.646 kb on - strand, within GFF4604at 395.769 kb on + strand, within GFF4604at 395.770 kb on - strand, within GFF4604at 395.848 kb on - strand, within GFF4604at 396.456 kb on - strandat 396.554 kb on + strand, within GFF4605at 396.922 kb on - strandat 396.977 kb on + strand, within GFF4606at 396.977 kb on + strand, within GFF4606at 396.978 kb on - strand, within GFF4606at 397.030 kb on + strand, within GFF4606at 397.065 kb on + strand, within GFF4606at 397.065 kb on + strand, within GFF4606at 397.268 kb on + strand, within GFF4606at 397.448 kb on - strand, within GFF4606at 397.459 kb on + strand, within GFF4606at 397.476 kb on - strand, within GFF4606

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with phi19h1_phage 15 MOI
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395,646 - GFF4604 0.78 +0.3
395,769 + GFF4604 0.84 -0.9
395,770 - GFF4604 0.84 +0.4
395,848 - GFF4604 0.88 -0.5
396,456 - -0.1
396,554 + GFF4605 0.31 -1.4
396,922 - +0.3
396,977 + GFF4606 0.14 +0.1
396,977 + GFF4606 0.14 +0.2
396,978 - GFF4606 0.14 +0.2
397,030 + GFF4606 0.22 +0.7
397,065 + GFF4606 0.27 +0.4
397,065 + GFF4606 0.27 +0.5
397,268 + GFF4606 0.57 +0.2
397,448 - GFF4606 0.83 +0.7
397,459 + GFF4606 0.85 +0.1
397,476 - GFF4606 0.87 +0.0

Or see this region's nucleotide sequence