Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4234

Experiment: LB_plus_SM_buffer with phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4233 and GFF4234 are separated by 663 nucleotidesGFF4234 and GFF4235 are separated by 155 nucleotidesGFF4235 and GFF4236 overlap by 4 nucleotidesGFF4236 and GFF4237 are separated by 323 nucleotides GFF4233 - Fimbrial protein precursor, at 14,615 to 15,151 GFF4233 GFF4234 - Possible transmembrane regulator, at 15,815 to 16,549 GFF4234 GFF4235 - Putative inner membrane protein, at 16,705 to 16,821 GFF4235 GFF4236 - Putative inner membrane protein, at 16,818 to 17,021 GFF4236 GFF4237 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 17,345 to 18,895 GFF4237 Position (kb) 15 16 17Strain fitness (log2 ratio) -1 0 1at 15.741 kb on + strandat 16.066 kb on - strand, within GFF4234at 16.787 kb on + strand, within GFF4235at 17.254 kb on - strandat 17.465 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with phi19h1_phage 15 MOI
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15,741 + -0.0
16,066 - GFF4234 0.34 -0.7
16,787 + GFF4235 0.70 -0.2
17,254 - -0.4
17,465 - +0.0

Or see this region's nucleotide sequence