Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3943

Experiment: LB_plus_SM_buffer with phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3942 and GFF3943 are separated by 9 nucleotidesGFF3943 and GFF3944 are separated by 14 nucleotidesGFF3944 and GFF3945 are separated by 10 nucleotides GFF3942 - Propanediol dehydratase reactivation factor large subunit, at 222,168 to 224,000 GFF3942 GFF3943 - Propanediol dehydratase small subunit (EC 4.2.1.28), at 224,010 to 224,531 GFF3943 GFF3944 - Propanediol dehydratase medium subunit (EC 4.2.1.28), at 224,546 to 225,220 GFF3944 GFF3945 - Propanediol dehydratase large subunit (EC 4.2.1.28), at 225,231 to 226,895 GFF3945 Position (kb) 224 225Strain fitness (log2 ratio) -1 0 1 2at 223.260 kb on - strand, within GFF3942at 223.441 kb on + strand, within GFF3942at 223.526 kb on + strand, within GFF3942at 223.913 kb on + strandat 223.971 kb on - strandat 223.991 kb on + strandat 223.992 kb on - strandat 223.992 kb on - strandat 223.994 kb on - strandat 224.045 kb on - strandat 224.164 kb on + strand, within GFF3943at 224.493 kb on + strandat 224.493 kb on + strandat 224.538 kb on - strandat 224.592 kb on + strandat 224.606 kb on - strandat 224.609 kb on - strandat 224.635 kb on - strand, within GFF3944at 224.728 kb on - strand, within GFF3944at 224.812 kb on + strand, within GFF3944at 224.812 kb on + strand, within GFF3944at 224.813 kb on - strand, within GFF3944at 225.189 kb on - strandat 225.500 kb on + strand, within GFF3945

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with phi19h1_phage 15 MOI
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223,260 - GFF3942 0.60 +0.6
223,441 + GFF3942 0.69 -0.5
223,526 + GFF3942 0.74 -0.7
223,913 + -0.2
223,971 - -1.2
223,991 + -0.0
223,992 - +0.3
223,992 - +0.1
223,994 - -0.0
224,045 - +0.9
224,164 + GFF3943 0.30 -1.4
224,493 + +2.2
224,493 + +1.2
224,538 - +0.4
224,592 + +0.2
224,606 - -0.9
224,609 - +0.9
224,635 - GFF3944 0.13 -0.7
224,728 - GFF3944 0.27 +0.3
224,812 + GFF3944 0.39 -0.2
224,812 + GFF3944 0.39 -1.5
224,813 - GFF3944 0.40 +0.0
225,189 - +0.5
225,500 + GFF3945 0.16 +1.2

Or see this region's nucleotide sequence