Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3794

Experiment: LB_plus_SM_buffer with phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3792 and GFF3793 are separated by 204 nucleotidesGFF3793 and GFF3794 are separated by 2 nucleotidesGFF3794 and GFF3795 are separated by 176 nucleotides GFF3792 - Pyridine nucleotide-disulphide oxidoreductase family protein, at 62,218 to 63,459 GFF3792 GFF3793 - FIG00638799: hypothetical protein, at 63,664 to 63,903 GFF3793 GFF3794 - SanA protein, at 63,906 to 64,625 GFF3794 GFF3795 - Cytidine deaminase (EC 3.5.4.5), at 64,802 to 65,686 GFF3795 Position (kb) 63 64 65Strain fitness (log2 ratio) -2 -1 0 1 2at 63.022 kb on + strand, within GFF3792at 63.199 kb on - strand, within GFF3792at 63.895 kb on + strandat 64.161 kb on - strand, within GFF3794at 64.202 kb on + strand, within GFF3794at 64.339 kb on + strand, within GFF3794at 64.386 kb on - strand, within GFF3794at 64.430 kb on - strand, within GFF3794at 64.459 kb on + strand, within GFF3794at 64.460 kb on - strand, within GFF3794at 64.510 kb on - strand, within GFF3794at 64.520 kb on - strand, within GFF3794at 64.523 kb on + strand, within GFF3794at 64.524 kb on - strand, within GFF3794at 64.526 kb on - strand, within GFF3794at 64.681 kb on + strandat 64.681 kb on + strandat 64.681 kb on + strandat 64.682 kb on - strandat 65.069 kb on - strand, within GFF3795at 65.078 kb on - strand, within GFF3795at 65.078 kb on - strand, within GFF3795at 65.086 kb on + strand, within GFF3795at 65.135 kb on - strand, within GFF3795at 65.221 kb on + strand, within GFF3795at 65.222 kb on - strand, within GFF3795at 65.516 kb on + strand, within GFF3795

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with phi19h1_phage 15 MOI
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63,022 + GFF3792 0.65 -0.3
63,199 - GFF3792 0.79 +0.3
63,895 + +1.8
64,161 - GFF3794 0.35 -0.6
64,202 + GFF3794 0.41 +2.6
64,339 + GFF3794 0.60 -0.2
64,386 - GFF3794 0.67 -0.2
64,430 - GFF3794 0.73 +0.1
64,459 + GFF3794 0.77 -1.2
64,460 - GFF3794 0.77 -1.4
64,510 - GFF3794 0.84 -0.3
64,520 - GFF3794 0.85 -1.1
64,523 + GFF3794 0.86 +0.8
64,524 - GFF3794 0.86 +0.2
64,526 - GFF3794 0.86 -2.1
64,681 + -1.0
64,681 + -1.9
64,681 + +0.8
64,682 - +0.6
65,069 - GFF3795 0.30 -0.8
65,078 - GFF3795 0.31 +0.8
65,078 - GFF3795 0.31 -0.3
65,086 + GFF3795 0.32 +0.5
65,135 - GFF3795 0.38 +1.5
65,221 + GFF3795 0.47 -1.5
65,222 - GFF3795 0.47 +0.1
65,516 + GFF3795 0.81 +0.4

Or see this region's nucleotide sequence