Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2785

Experiment: LB_plus_SM_buffer with phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2784 and GFF2785 are separated by 158 nucleotidesGFF2785 and GFF2786 are separated by 270 nucleotidesGFF2786 and GFF2787 are separated by 11 nucleotides GFF2784 - GTP-binding and nucleic acid-binding protein YchF, at 307,087 to 308,178 GFF2784 GFF2785 - FIG01045804: hypothetical protein, at 308,337 to 309,602 GFF2785 GFF2786 - hypothetical protein, at 309,873 to 310,001 GFF2786 GFF2787 - Uptake hydrogenase small subunit precursor (EC 1.12.99.6), at 310,013 to 311,215 GFF2787 Position (kb) 308 309 310Strain fitness (log2 ratio) -2 -1 0 1at 307.458 kb on + strand, within GFF2784at 307.467 kb on + strand, within GFF2784at 307.697 kb on - strand, within GFF2784at 308.077 kb on - strandat 309.123 kb on - strand, within GFF2785at 309.128 kb on - strand, within GFF2785at 309.385 kb on - strand, within GFF2785at 309.735 kb on - strandat 309.786 kb on + strandat 309.862 kb on + strandat 309.866 kb on + strandat 309.868 kb on + strandat 309.951 kb on - strand, within GFF2786at 310.443 kb on - strand, within GFF2787at 310.495 kb on + strand, within GFF2787

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with phi19h1_phage 15 MOI
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307,458 + GFF2784 0.34 -1.3
307,467 + GFF2784 0.35 -0.7
307,697 - GFF2784 0.56 +0.9
308,077 - -0.7
309,123 - GFF2785 0.62 +1.1
309,128 - GFF2785 0.62 -2.3
309,385 - GFF2785 0.83 -1.0
309,735 - -0.2
309,786 + -0.3
309,862 + +0.7
309,866 + +0.0
309,868 + -0.4
309,951 - GFF2786 0.60 -0.1
310,443 - GFF2787 0.36 -0.1
310,495 + GFF2787 0.40 +0.1

Or see this region's nucleotide sequence