Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2667

Experiment: LB_plus_SM_buffer with phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2666 and GFF2667 are separated by 548 nucleotidesGFF2667 and GFF2668 are separated by 390 nucleotides GFF2666 - FIG00545237: hypothetical protein, at 188,875 to 189,471 GFF2666 GFF2667 - Right origin-binding protein, at 190,020 to 190,871 GFF2667 GFF2668 - FIG01046415: hypothetical protein, at 191,262 to 192,371 GFF2668 Position (kb) 190 191Strain fitness (log2 ratio) -1 0 1at 189.215 kb on - strand, within GFF2666at 189.220 kb on - strand, within GFF2666at 189.220 kb on - strand, within GFF2666at 189.382 kb on - strand, within GFF2666at 189.451 kb on - strandat 190.358 kb on - strand, within GFF2667at 191.170 kb on - strandat 191.597 kb on - strand, within GFF2668at 191.623 kb on - strand, within GFF2668

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with phi19h1_phage 15 MOI
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189,215 - GFF2666 0.57 +0.1
189,220 - GFF2666 0.58 +0.3
189,220 - GFF2666 0.58 -0.6
189,382 - GFF2666 0.85 +0.3
189,451 - +0.3
190,358 - GFF2667 0.40 -0.5
191,170 - +0.0
191,597 - GFF2668 0.30 -0.9
191,623 - GFF2668 0.33 +0.2

Or see this region's nucleotide sequence