Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1836

Experiment: LB_plus_SM_buffer with phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1835 and GFF1836 are separated by 49 nucleotidesGFF1836 and GFF1837 are separated by 82 nucleotides GFF1835 - Nitrate/nitrite transporter, at 24,367 to 25,692 GFF1835 GFF1836 - Transcriptional regulator, GntR family, at 25,742 to 26,626 GFF1836 GFF1837 - 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64), at 26,709 to 27,437 GFF1837 Position (kb) 25 26 27Strain fitness (log2 ratio) -1 0 1at 24.822 kb on + strand, within GFF1835at 25.000 kb on + strand, within GFF1835at 25.126 kb on + strand, within GFF1835at 25.173 kb on - strand, within GFF1835at 25.247 kb on - strand, within GFF1835at 26.349 kb on - strand, within GFF1836at 26.401 kb on + strand, within GFF1836at 26.483 kb on - strand, within GFF1836at 26.643 kb on + strandat 26.644 kb on - strandat 26.644 kb on - strandat 26.681 kb on + strandat 26.681 kb on + strandat 26.704 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with phi19h1_phage 15 MOI
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24,822 + GFF1835 0.34 +0.2
25,000 + GFF1835 0.48 +0.5
25,126 + GFF1835 0.57 +0.4
25,173 - GFF1835 0.61 -0.0
25,247 - GFF1835 0.66 -0.9
26,349 - GFF1836 0.69 -0.6
26,401 + GFF1836 0.74 -0.0
26,483 - GFF1836 0.84 -0.7
26,643 + +0.5
26,644 - -0.1
26,644 - -0.1
26,681 + -0.3
26,681 + -0.1
26,704 + +0.1

Or see this region's nucleotide sequence