Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1910

Experiment: m.b. pH6.5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1908 and B158DRAFT_1909 are separated by 36 nucleotidesB158DRAFT_1909 and B158DRAFT_1910 are separated by 43 nucleotidesB158DRAFT_1910 and B158DRAFT_1911 are separated by 2 nucleotidesB158DRAFT_1911 and B158DRAFT_1912 are separated by 13 nucleotides B158DRAFT_1908: B158DRAFT_1908 - Glycine/serine hydroxymethyltransferase, at 43,760 to 45,013 _1908 B158DRAFT_1909: B158DRAFT_1909 - transcriptional regulator NrdR, at 45,050 to 45,508 _1909 B158DRAFT_1910: B158DRAFT_1910 - diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26), at 45,552 to 46,670 _1910 B158DRAFT_1911: B158DRAFT_1911 - riboflavin synthase alpha chain (EC 2.5.1.9), at 46,673 to 47,281 _1911 B158DRAFT_1912: B158DRAFT_1912 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 47,295 to 48,413 _1912 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.626 kb on + strand, within B158DRAFT_1908at 44.773 kb on + strand, within B158DRAFT_1908at 44.781 kb on - strand, within B158DRAFT_1908at 44.791 kb on + strand, within B158DRAFT_1908at 44.799 kb on - strand, within B158DRAFT_1908at 44.845 kb on - strand, within B158DRAFT_1908at 44.851 kb on - strand, within B158DRAFT_1908at 44.885 kb on + strand, within B158DRAFT_1908at 45.047 kb on + strandat 45.047 kb on + strandat 45.202 kb on + strand, within B158DRAFT_1909at 45.288 kb on + strand, within B158DRAFT_1909at 45.339 kb on + strand, within B158DRAFT_1909at 45.339 kb on + strand, within B158DRAFT_1909at 45.402 kb on + strand, within B158DRAFT_1909at 47.257 kb on + strandat 47.257 kb on + strandat 47.257 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. pH6.5
remove
44,605 + B158DRAFT_1908 0.67 -0.4
44,605 + B158DRAFT_1908 0.67 -2.4
44,605 + B158DRAFT_1908 0.67 -1.1
44,605 + B158DRAFT_1908 0.67 -1.5
44,605 + B158DRAFT_1908 0.67 -1.2
44,605 + B158DRAFT_1908 0.67 -0.5
44,605 + B158DRAFT_1908 0.67 -0.2
44,605 + B158DRAFT_1908 0.67 -1.0
44,605 + B158DRAFT_1908 0.67 -1.6
44,605 + B158DRAFT_1908 0.67 -0.2
44,605 + B158DRAFT_1908 0.67 -0.8
44,605 + B158DRAFT_1908 0.67 -1.0
44,605 + B158DRAFT_1908 0.67 -0.6
44,613 - B158DRAFT_1908 0.68 -0.6
44,613 - B158DRAFT_1908 0.68 -1.3
44,613 - B158DRAFT_1908 0.68 -0.7
44,613 - B158DRAFT_1908 0.68 -1.2
44,613 - B158DRAFT_1908 0.68 -0.8
44,613 - B158DRAFT_1908 0.68 -1.3
44,613 - B158DRAFT_1908 0.68 -1.2
44,613 - B158DRAFT_1908 0.68 -0.6
44,613 - B158DRAFT_1908 0.68 -1.3
44,613 - B158DRAFT_1908 0.68 -1.7
44,626 + B158DRAFT_1908 0.69 -0.6
44,773 + B158DRAFT_1908 0.81 -1.1
44,781 - B158DRAFT_1908 0.81 -0.8
44,791 + B158DRAFT_1908 0.82 -1.4
44,799 - B158DRAFT_1908 0.83 +0.0
44,845 - B158DRAFT_1908 0.87 -0.2
44,851 - B158DRAFT_1908 0.87 -0.5
44,885 + B158DRAFT_1908 0.90 -0.6
45,047 + -1.4
45,047 + -0.2
45,202 + B158DRAFT_1909 0.33 -2.0
45,288 + B158DRAFT_1909 0.52 -1.4
45,339 + B158DRAFT_1909 0.63 -2.0
45,339 + B158DRAFT_1909 0.63 +0.4
45,402 + B158DRAFT_1909 0.77 -1.8
47,257 + -0.1
47,257 + -0.6
47,257 + -0.5

Or see this region's nucleotide sequence