Strain Fitness in Agrobacterium fabrum C58 around Atu6196

Experiment: Nicotinamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu6193 and Atu6194 are separated by 23 nucleotidesAtu6194 and Atu6195 overlap by 11 nucleotidesAtu6195 and Atu6196 are separated by 16 nucleotidesAtu6196 and Atu6197 are separated by 41 nucleotides Atu6193: Atu6193 - conserved hypothetical protein, at 211,215 to 211,946 Atu6193 Atu6194: Atu6194 - conserved hypothetical protein, at 211,970 to 212,497 Atu6194 Atu6195: Atu6195 - conserved hypothetical protein, at 212,487 to 212,684 Atu6195 Atu6196: Atu6196 - arabinose phosphate phosphatase, at 212,701 to 213,429 Atu6196 Atu6197: Atu6197 - agrocinopine phosphodiesterase, at 213,471 to 213,755 Atu6197 Position (kb) 212 213 214Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 211.733 kb on + strand, within Atu6193at 211.735 kb on + strand, within Atu6193at 211.743 kb on - strand, within Atu6193at 211.743 kb on - strand, within Atu6193at 211.765 kb on + strand, within Atu6193at 211.765 kb on + strand, within Atu6193at 211.765 kb on + strand, within Atu6193at 211.773 kb on - strand, within Atu6193at 211.773 kb on - strand, within Atu6193at 211.787 kb on + strand, within Atu6193at 211.787 kb on - strand, within Atu6193at 211.812 kb on - strand, within Atu6193at 211.812 kb on - strand, within Atu6193at 211.814 kb on + strand, within Atu6193at 211.859 kb on + strand, within Atu6193at 211.864 kb on + strand, within Atu6193at 211.874 kb on + strandat 211.874 kb on + strandat 211.882 kb on - strandat 211.882 kb on - strandat 211.887 kb on - strandat 211.887 kb on - strandat 211.958 kb on + strandat 211.966 kb on - strandat 211.986 kb on - strandat 212.034 kb on + strand, within Atu6194at 212.047 kb on - strand, within Atu6194at 212.052 kb on - strand, within Atu6194at 212.108 kb on - strand, within Atu6194at 212.140 kb on - strand, within Atu6194at 212.193 kb on - strand, within Atu6194at 212.193 kb on - strand, within Atu6194at 212.204 kb on + strand, within Atu6194at 212.204 kb on + strand, within Atu6194at 212.222 kb on - strand, within Atu6194at 212.243 kb on - strand, within Atu6194at 212.245 kb on - strand, within Atu6194at 212.247 kb on - strand, within Atu6194at 212.254 kb on + strand, within Atu6194at 212.255 kb on + strand, within Atu6194at 212.262 kb on - strand, within Atu6194at 212.310 kb on + strand, within Atu6194at 212.315 kb on + strand, within Atu6194at 212.316 kb on + strand, within Atu6194at 212.318 kb on - strand, within Atu6194at 212.323 kb on - strand, within Atu6194at 212.337 kb on - strand, within Atu6194at 212.378 kb on - strand, within Atu6194at 212.430 kb on + strand, within Atu6194at 212.430 kb on + strand, within Atu6194at 212.438 kb on - strand, within Atu6194at 212.438 kb on - strand, within Atu6194at 212.438 kb on - strand, within Atu6194at 212.438 kb on - strand, within Atu6194at 212.456 kb on - strandat 212.457 kb on - strandat 212.470 kb on - strandat 212.477 kb on - strandat 212.485 kb on - strandat 212.492 kb on - strandat 212.499 kb on + strandat 212.571 kb on + strand, within Atu6195at 212.649 kb on + strand, within Atu6195at 212.649 kb on - strand, within Atu6195at 212.693 kb on + strandat 212.701 kb on - strandat 212.719 kb on - strandat 212.719 kb on - strandat 212.740 kb on - strandat 212.771 kb on + strandat 212.776 kb on + strand, within Atu6196at 212.790 kb on + strand, within Atu6196at 212.813 kb on + strand, within Atu6196at 212.821 kb on - strand, within Atu6196at 212.862 kb on - strand, within Atu6196at 212.866 kb on + strand, within Atu6196at 212.883 kb on + strand, within Atu6196at 212.883 kb on + strand, within Atu6196at 212.905 kb on - strand, within Atu6196at 212.910 kb on - strand, within Atu6196at 212.937 kb on - strand, within Atu6196at 212.991 kb on - strand, within Atu6196at 212.991 kb on - strand, within Atu6196at 213.049 kb on + strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.060 kb on - strand, within Atu6196at 213.119 kb on + strand, within Atu6196at 213.133 kb on + strand, within Atu6196at 213.135 kb on - strand, within Atu6196at 213.138 kb on + strand, within Atu6196at 213.140 kb on - strand, within Atu6196at 213.160 kb on - strand, within Atu6196at 213.160 kb on - strand, within Atu6196at 213.207 kb on + strand, within Atu6196at 213.214 kb on - strand, within Atu6196at 213.287 kb on - strand, within Atu6196at 213.324 kb on + strand, within Atu6196at 213.346 kb on - strand, within Atu6196at 213.404 kb on + strandat 213.435 kb on + strandat 213.443 kb on - strandat 213.464 kb on + strandat 213.464 kb on + strandat 213.487 kb on + strandat 213.496 kb on + strandat 213.502 kb on - strand, within Atu6197at 213.514 kb on - strand, within Atu6197at 213.514 kb on - strand, within Atu6197at 213.553 kb on + strand, within Atu6197at 213.571 kb on - strand, within Atu6197at 213.617 kb on + strand, within Atu6197at 213.620 kb on - strand, within Atu6197at 213.628 kb on - strand, within Atu6197at 213.670 kb on - strand, within Atu6197at 213.680 kb on + strand, within Atu6197at 213.686 kb on - strand, within Atu6197at 213.733 kb on + strandat 213.743 kb on + strandat 213.793 kb on - strandat 213.804 kb on + strandat 213.817 kb on - strandat 213.833 kb on - strandat 213.884 kb on - strandat 213.918 kb on - strandat 213.918 kb on - strandat 213.977 kb on + strandat 213.985 kb on - strandat 213.998 kb on + strandat 214.006 kb on + strandat 214.014 kb on - strandat 214.044 kb on - strandat 214.156 kb on + strandat 214.159 kb on - strandat 214.164 kb on + strandat 214.164 kb on - strandat 214.164 kb on - strandat 214.166 kb on + strandat 214.172 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nicotinamide (N)
remove
211,733 + Atu6193 0.71 +1.9
211,735 + Atu6193 0.71 -1.0
211,743 - Atu6193 0.72 +0.1
211,743 - Atu6193 0.72 +0.0
211,765 + Atu6193 0.75 +0.4
211,765 + Atu6193 0.75 +2.9
211,765 + Atu6193 0.75 +0.8
211,773 - Atu6193 0.76 +1.6
211,773 - Atu6193 0.76 +0.1
211,787 + Atu6193 0.78 -0.2
211,787 - Atu6193 0.78 -1.0
211,812 - Atu6193 0.82 +0.8
211,812 - Atu6193 0.82 +1.1
211,814 + Atu6193 0.82 -1.1
211,859 + Atu6193 0.88 -0.4
211,864 + Atu6193 0.89 +0.7
211,874 + -0.2
211,874 + +0.8
211,882 - +2.0
211,882 - +0.9
211,887 - -0.2
211,887 - +1.1
211,958 + -1.9
211,966 - +0.9
211,986 - -1.1
212,034 + Atu6194 0.12 +2.4
212,047 - Atu6194 0.15 +0.9
212,052 - Atu6194 0.16 -1.0
212,108 - Atu6194 0.26 +2.5
212,140 - Atu6194 0.32 -0.5
212,193 - Atu6194 0.42 -0.0
212,193 - Atu6194 0.42 -0.1
212,204 + Atu6194 0.44 +0.9
212,204 + Atu6194 0.44 +1.5
212,222 - Atu6194 0.48 +0.8
212,243 - Atu6194 0.52 -0.4
212,245 - Atu6194 0.52 +0.3
212,247 - Atu6194 0.52 -0.6
212,254 + Atu6194 0.54 +1.9
212,255 + Atu6194 0.54 +3.5
212,262 - Atu6194 0.55 -0.3
212,310 + Atu6194 0.64 +2.9
212,315 + Atu6194 0.65 +0.7
212,316 + Atu6194 0.66 +2.4
212,318 - Atu6194 0.66 +1.1
212,323 - Atu6194 0.67 +3.5
212,337 - Atu6194 0.70 +0.9
212,378 - Atu6194 0.77 -0.0
212,430 + Atu6194 0.87 +0.1
212,430 + Atu6194 0.87 +0.3
212,438 - Atu6194 0.89 +0.5
212,438 - Atu6194 0.89 +0.9
212,438 - Atu6194 0.89 +1.3
212,438 - Atu6194 0.89 +0.1
212,456 - +1.6
212,457 - +2.1
212,470 - +1.5
212,477 - +1.5
212,485 - -0.1
212,492 - +1.9
212,499 + +0.7
212,571 + Atu6195 0.42 -0.0
212,649 + Atu6195 0.82 +0.4
212,649 - Atu6195 0.82 -1.1
212,693 + +0.3
212,701 - +1.0
212,719 - +0.7
212,719 - +0.7
212,740 - +3.5
212,771 + +0.4
212,776 + Atu6196 0.10 +2.3
212,790 + Atu6196 0.12 +0.2
212,813 + Atu6196 0.15 +1.5
212,821 - Atu6196 0.16 +0.5
212,862 - Atu6196 0.22 +2.1
212,866 + Atu6196 0.23 +2.5
212,883 + Atu6196 0.25 +1.2
212,883 + Atu6196 0.25 -0.0
212,905 - Atu6196 0.28 +0.3
212,910 - Atu6196 0.29 +0.1
212,937 - Atu6196 0.32 +2.5
212,991 - Atu6196 0.40 +2.5
212,991 - Atu6196 0.40 +0.2
213,049 + Atu6196 0.48 -0.2
213,049 - Atu6196 0.48 +0.4
213,049 - Atu6196 0.48 +0.9
213,049 - Atu6196 0.48 +1.7
213,049 - Atu6196 0.48 +1.9
213,049 - Atu6196 0.48 +0.8
213,049 - Atu6196 0.48 +0.8
213,060 - Atu6196 0.49 -0.3
213,119 + Atu6196 0.57 +1.8
213,133 + Atu6196 0.59 +0.2
213,135 - Atu6196 0.60 +0.3
213,138 + Atu6196 0.60 +0.1
213,140 - Atu6196 0.60 +1.8
213,160 - Atu6196 0.63 +0.9
213,160 - Atu6196 0.63 +1.5
213,207 + Atu6196 0.69 +0.7
213,214 - Atu6196 0.70 +0.1
213,287 - Atu6196 0.80 +0.8
213,324 + Atu6196 0.85 +0.7
213,346 - Atu6196 0.88 +1.3
213,404 + -0.9
213,435 + -0.7
213,443 - +5.5
213,464 + +1.7
213,464 + +1.0
213,487 + -0.2
213,496 + +0.4
213,502 - Atu6197 0.11 +0.3
213,514 - Atu6197 0.15 +1.0
213,514 - Atu6197 0.15 +1.2
213,553 + Atu6197 0.29 +1.3
213,571 - Atu6197 0.35 +1.5
213,617 + Atu6197 0.51 +0.9
213,620 - Atu6197 0.52 +3.5
213,628 - Atu6197 0.55 -1.2
213,670 - Atu6197 0.70 +1.1
213,680 + Atu6197 0.73 -0.0
213,686 - Atu6197 0.75 +0.0
213,733 + +0.1
213,743 + +1.5
213,793 - +1.3
213,804 + +0.1
213,817 - +0.7
213,833 - +0.3
213,884 - +3.5
213,918 - -0.9
213,918 - +1.2
213,977 + +1.2
213,985 - +1.4
213,998 + +0.1
214,006 + +1.0
214,014 - +1.1
214,044 - -0.5
214,156 + +0.4
214,159 - -0.7
214,164 + +1.1
214,164 - +0.8
214,164 - +0.8
214,166 + +1.0
214,172 - +1.0

Or see this region's nucleotide sequence