Experiment: Nicotinamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5450 and Atu5451 are separated by 137 nucleotides Atu5451 and Atu5452 are separated by 295 nucleotides Atu5452 and Atu5453 overlap by 4 nucleotides
Atu5450: Atu5450 - hypothetical protein, at 442,608 to 442,907
Atu5450
Atu5451: Atu5451 - hypothetical protein, at 443,045 to 443,251
Atu5451
Atu5452: Atu5452 - ABC transporter nucleotide binding/ATPase, at 443,547 to 444,206
Atu5452
Atu5453: Atu5453 - ABC transporter membrane spanning protein, at 444,203 to 446,611
Atu5453
Position (kb) 443
444
445 Strain fitness (log2 ratio) -1
0
1
2 at 442.606 kb on - strand at 442.673 kb on - strand, within Atu5450 at 442.686 kb on - strand, within Atu5450 at 442.686 kb on - strand, within Atu5450 at 442.749 kb on + strand, within Atu5450 at 442.762 kb on + strand, within Atu5450 at 442.762 kb on + strand, within Atu5450 at 442.762 kb on + strand, within Atu5450 at 442.767 kb on + strand, within Atu5450 at 442.767 kb on + strand, within Atu5450 at 442.922 kb on + strand at 443.016 kb on + strand at 443.016 kb on + strand at 443.125 kb on + strand, within Atu5451 at 443.128 kb on - strand, within Atu5451 at 443.254 kb on - strand at 443.427 kb on + strand at 443.446 kb on - strand at 443.455 kb on - strand at 443.460 kb on - strand at 443.519 kb on - strand at 443.553 kb on - strand at 443.617 kb on - strand, within Atu5452 at 443.690 kb on + strand, within Atu5452 at 443.700 kb on + strand, within Atu5452 at 443.707 kb on + strand, within Atu5452 at 443.715 kb on + strand, within Atu5452 at 443.717 kb on + strand, within Atu5452 at 443.728 kb on - strand, within Atu5452 at 443.776 kb on + strand, within Atu5452 at 443.784 kb on - strand, within Atu5452 at 443.794 kb on - strand, within Atu5452 at 443.953 kb on + strand, within Atu5452 at 444.021 kb on + strand, within Atu5452 at 444.021 kb on + strand, within Atu5452 at 444.021 kb on + strand, within Atu5452 at 444.244 kb on + strand at 444.279 kb on + strand at 444.356 kb on + strand at 444.356 kb on + strand at 444.364 kb on - strand at 444.418 kb on + strand at 444.432 kb on - strand at 444.450 kb on + strand, within Atu5453 at 444.458 kb on - strand, within Atu5453 at 444.479 kb on + strand, within Atu5453 at 444.479 kb on + strand, within Atu5453 at 444.648 kb on + strand, within Atu5453 at 444.656 kb on - strand, within Atu5453 at 444.656 kb on - strand, within Atu5453 at 444.656 kb on - strand, within Atu5453 at 444.656 kb on - strand, within Atu5453 at 444.736 kb on - strand, within Atu5453 at 444.819 kb on + strand, within Atu5453 at 444.848 kb on - strand, within Atu5453 at 444.867 kb on - strand, within Atu5453 at 444.895 kb on - strand, within Atu5453 at 444.917 kb on - strand, within Atu5453 at 444.970 kb on + strand, within Atu5453 at 444.970 kb on + strand, within Atu5453 at 444.970 kb on + strand, within Atu5453 at 444.970 kb on + strand, within Atu5453 at 444.976 kb on - strand, within Atu5453 at 444.978 kb on - strand, within Atu5453 at 444.978 kb on - strand, within Atu5453 at 445.073 kb on + strand, within Atu5453 at 445.073 kb on + strand, within Atu5453 at 445.073 kb on + strand, within Atu5453 at 445.073 kb on + strand, within Atu5453 at 445.073 kb on + strand, within Atu5453 at 445.078 kb on + strand, within Atu5453 at 445.078 kb on + strand, within Atu5453 at 445.081 kb on - strand, within Atu5453 at 445.081 kb on - strand, within Atu5453 at 445.085 kb on + strand, within Atu5453 at 445.085 kb on + strand, within Atu5453 at 445.085 kb on + strand, within Atu5453 at 445.093 kb on - strand, within Atu5453 at 445.093 kb on - strand, within Atu5453 at 445.100 kb on + strand, within Atu5453 at 445.190 kb on + strand, within Atu5453
Per-strain Table
Position Strand Gene LocusTag Fraction Nicotinamide (N) remove 442,606 - +2.0 442,673 - Atu5450 0.22 +0.4 442,686 - Atu5450 0.26 -0.9 442,686 - Atu5450 0.26 -0.0 442,749 + Atu5450 0.47 +1.1 442,762 + Atu5450 0.51 +1.6 442,762 + Atu5450 0.51 +2.0 442,762 + Atu5450 0.51 -0.3 442,767 + Atu5450 0.53 -1.3 442,767 + Atu5450 0.53 -0.4 442,922 + +1.4 443,016 + +1.6 443,016 + +1.7 443,125 + Atu5451 0.39 +0.6 443,128 - Atu5451 0.40 +0.9 443,254 - +1.4 443,427 + +0.6 443,446 - +0.5 443,455 - +0.3 443,460 - +2.2 443,519 - +0.4 443,553 - -0.2 443,617 - Atu5452 0.11 -1.0 443,690 + Atu5452 0.22 -0.8 443,700 + Atu5452 0.23 +1.2 443,707 + Atu5452 0.24 -0.6 443,715 + Atu5452 0.25 +1.6 443,717 + Atu5452 0.26 +0.8 443,728 - Atu5452 0.27 +1.2 443,776 + Atu5452 0.35 -0.1 443,784 - Atu5452 0.36 -0.9 443,794 - Atu5452 0.37 +0.3 443,953 + Atu5452 0.62 -1.2 444,021 + Atu5452 0.72 +1.8 444,021 + Atu5452 0.72 +0.4 444,021 + Atu5452 0.72 -1.2 444,244 + +0.5 444,279 + +0.2 444,356 + +1.4 444,356 + -0.9 444,364 - +1.2 444,418 + +1.2 444,432 - +0.6 444,450 + Atu5453 0.10 +0.4 444,458 - Atu5453 0.11 -0.3 444,479 + Atu5453 0.11 +1.8 444,479 + Atu5453 0.11 +0.4 444,648 + Atu5453 0.18 +0.3 444,656 - Atu5453 0.19 +0.8 444,656 - Atu5453 0.19 +0.6 444,656 - Atu5453 0.19 +1.7 444,656 - Atu5453 0.19 -0.2 444,736 - Atu5453 0.22 -0.1 444,819 + Atu5453 0.26 +0.3 444,848 - Atu5453 0.27 +0.2 444,867 - Atu5453 0.28 +0.8 444,895 - Atu5453 0.29 +1.4 444,917 - Atu5453 0.30 -0.6 444,970 + Atu5453 0.32 +0.7 444,970 + Atu5453 0.32 -0.3 444,970 + Atu5453 0.32 +0.7 444,970 + Atu5453 0.32 -1.7 444,976 - Atu5453 0.32 +0.1 444,978 - Atu5453 0.32 +0.0 444,978 - Atu5453 0.32 +0.3 445,073 + Atu5453 0.36 -0.8 445,073 + Atu5453 0.36 +2.2 445,073 + Atu5453 0.36 +1.3 445,073 + Atu5453 0.36 +0.2 445,073 + Atu5453 0.36 -1.0 445,078 + Atu5453 0.36 +0.6 445,078 + Atu5453 0.36 -0.5 445,081 - Atu5453 0.36 +0.5 445,081 - Atu5453 0.36 +1.0 445,085 + Atu5453 0.37 -0.4 445,085 + Atu5453 0.37 +1.4 445,085 + Atu5453 0.37 +0.0 445,093 - Atu5453 0.37 +1.3 445,093 - Atu5453 0.37 -0.0 445,100 + Atu5453 0.37 -0.4 445,190 + Atu5453 0.41 +1.8
Or see this region's nucleotide sequence