Strain Fitness in Agrobacterium fabrum C58 around Atu5198

Experiment: Nicotinamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5197 and Atu5198 are separated by 30 nucleotidesAtu5198 and Atu5199 are separated by 129 nucleotides Atu5197: Atu5197 - LysR family transcriptional regulator, at 193,078 to 194,055 Atu5197 Atu5198: Atu5198 - putative oxidoreductase, at 194,086 to 195,102 Atu5198 Atu5199: Atu5199 - oxidoreductase, at 195,232 to 196,332 Atu5199 Position (kb) 194 195 196Strain fitness (log2 ratio) -2 -1 0 1 2 3at 193.087 kb on - strandat 193.121 kb on - strandat 193.168 kb on + strandat 193.168 kb on + strandat 193.199 kb on + strand, within Atu5197at 193.199 kb on + strand, within Atu5197at 193.207 kb on - strand, within Atu5197at 193.224 kb on + strand, within Atu5197at 193.224 kb on + strand, within Atu5197at 193.232 kb on - strand, within Atu5197at 193.232 kb on - strand, within Atu5197at 193.251 kb on + strand, within Atu5197at 193.251 kb on - strand, within Atu5197at 193.278 kb on - strand, within Atu5197at 193.410 kb on + strand, within Atu5197at 193.418 kb on - strand, within Atu5197at 193.419 kb on - strand, within Atu5197at 193.419 kb on - strand, within Atu5197at 193.544 kb on + strand, within Atu5197at 193.641 kb on - strand, within Atu5197at 193.806 kb on + strand, within Atu5197at 193.838 kb on - strand, within Atu5197at 193.853 kb on - strand, within Atu5197at 193.917 kb on - strand, within Atu5197at 193.944 kb on - strand, within Atu5197at 193.949 kb on - strand, within Atu5197at 193.949 kb on - strand, within Atu5197at 194.021 kb on - strandat 194.131 kb on - strandat 194.144 kb on + strandat 194.152 kb on - strandat 194.174 kb on + strandat 194.306 kb on - strand, within Atu5198at 194.306 kb on - strand, within Atu5198at 194.324 kb on + strand, within Atu5198at 194.332 kb on - strand, within Atu5198at 194.418 kb on - strand, within Atu5198at 194.418 kb on - strand, within Atu5198at 194.454 kb on - strand, within Atu5198at 194.456 kb on + strand, within Atu5198at 194.464 kb on - strand, within Atu5198at 194.464 kb on - strand, within Atu5198at 194.469 kb on + strand, within Atu5198at 194.477 kb on - strand, within Atu5198at 194.477 kb on - strand, within Atu5198at 194.509 kb on + strand, within Atu5198at 194.559 kb on - strand, within Atu5198at 194.612 kb on + strand, within Atu5198at 194.620 kb on - strand, within Atu5198at 194.650 kb on + strand, within Atu5198at 194.671 kb on + strand, within Atu5198at 194.718 kb on + strand, within Atu5198at 194.722 kb on - strand, within Atu5198at 194.726 kb on - strand, within Atu5198at 194.734 kb on + strand, within Atu5198at 194.734 kb on + strand, within Atu5198at 194.741 kb on - strand, within Atu5198at 194.741 kb on - strand, within Atu5198at 194.741 kb on - strand, within Atu5198at 194.742 kb on - strand, within Atu5198at 194.742 kb on - strand, within Atu5198at 194.802 kb on + strand, within Atu5198at 194.850 kb on - strand, within Atu5198at 194.873 kb on - strand, within Atu5198at 194.915 kb on + strand, within Atu5198at 194.940 kb on + strand, within Atu5198at 194.940 kb on + strand, within Atu5198at 194.940 kb on + strand, within Atu5198at 194.940 kb on + strand, within Atu5198at 194.940 kb on + strand, within Atu5198at 194.948 kb on - strand, within Atu5198at 194.948 kb on - strand, within Atu5198at 194.948 kb on - strand, within Atu5198at 194.948 kb on - strand, within Atu5198at 194.948 kb on - strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 195.085 kb on - strandat 195.164 kb on + strandat 195.239 kb on + strandat 195.269 kb on + strandat 195.317 kb on - strandat 195.357 kb on + strand, within Atu5199at 195.362 kb on + strand, within Atu5199at 195.362 kb on + strand, within Atu5199at 195.369 kb on - strand, within Atu5199at 195.370 kb on - strand, within Atu5199at 195.400 kb on + strand, within Atu5199at 195.445 kb on - strand, within Atu5199at 195.507 kb on - strand, within Atu5199at 195.529 kb on + strand, within Atu5199at 195.597 kb on - strand, within Atu5199at 195.734 kb on - strand, within Atu5199at 195.969 kb on + strand, within Atu5199at 195.974 kb on + strand, within Atu5199at 196.026 kb on - strand, within Atu5199at 196.043 kb on + strand, within Atu5199

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Per-strain Table

Position Strand Gene LocusTag Fraction Nicotinamide (N)
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193,087 - +0.9
193,121 - +0.4
193,168 + -1.1
193,168 + +0.6
193,199 + Atu5197 0.12 +0.7
193,199 + Atu5197 0.12 +0.4
193,207 - Atu5197 0.13 +1.0
193,224 + Atu5197 0.15 -0.3
193,224 + Atu5197 0.15 -0.1
193,232 - Atu5197 0.16 -0.8
193,232 - Atu5197 0.16 -2.1
193,251 + Atu5197 0.18 -0.2
193,251 - Atu5197 0.18 -0.5
193,278 - Atu5197 0.20 -0.2
193,410 + Atu5197 0.34 +1.0
193,418 - Atu5197 0.35 +0.9
193,419 - Atu5197 0.35 -0.3
193,419 - Atu5197 0.35 +0.3
193,544 + Atu5197 0.48 +1.6
193,641 - Atu5197 0.58 +0.4
193,806 + Atu5197 0.74 -0.7
193,838 - Atu5197 0.78 -1.4
193,853 - Atu5197 0.79 +0.4
193,917 - Atu5197 0.86 +0.8
193,944 - Atu5197 0.89 +1.2
193,949 - Atu5197 0.89 +1.0
193,949 - Atu5197 0.89 -0.1
194,021 - +2.4
194,131 - +1.6
194,144 + +1.1
194,152 - -0.8
194,174 + +0.4
194,306 - Atu5198 0.22 +1.1
194,306 - Atu5198 0.22 +1.4
194,324 + Atu5198 0.23 +1.7
194,332 - Atu5198 0.24 -0.2
194,418 - Atu5198 0.33 +0.9
194,418 - Atu5198 0.33 +0.1
194,454 - Atu5198 0.36 +1.0
194,456 + Atu5198 0.36 +0.1
194,464 - Atu5198 0.37 +0.2
194,464 - Atu5198 0.37 +0.5
194,469 + Atu5198 0.38 -1.3
194,477 - Atu5198 0.38 -0.5
194,477 - Atu5198 0.38 +2.4
194,509 + Atu5198 0.42 +0.3
194,559 - Atu5198 0.47 -0.1
194,612 + Atu5198 0.52 +0.5
194,620 - Atu5198 0.53 +1.3
194,650 + Atu5198 0.55 +0.1
194,671 + Atu5198 0.58 +1.4
194,718 + Atu5198 0.62 +3.2
194,722 - Atu5198 0.63 +1.6
194,726 - Atu5198 0.63 -0.2
194,734 + Atu5198 0.64 +1.9
194,734 + Atu5198 0.64 -0.2
194,741 - Atu5198 0.64 -0.6
194,741 - Atu5198 0.64 +1.2
194,741 - Atu5198 0.64 -0.3
194,742 - Atu5198 0.65 +0.6
194,742 - Atu5198 0.65 +0.8
194,802 + Atu5198 0.70 +1.9
194,850 - Atu5198 0.75 -0.8
194,873 - Atu5198 0.77 +0.6
194,915 + Atu5198 0.82 +1.7
194,940 + Atu5198 0.84 +0.9
194,940 + Atu5198 0.84 -1.2
194,940 + Atu5198 0.84 +3.2
194,940 + Atu5198 0.84 +1.1
194,940 + Atu5198 0.84 +1.0
194,948 - Atu5198 0.85 +0.2
194,948 - Atu5198 0.85 +0.6
194,948 - Atu5198 0.85 +0.1
194,948 - Atu5198 0.85 -1.7
194,948 - Atu5198 0.85 +0.7
194,963 + Atu5198 0.86 +1.7
194,963 + Atu5198 0.86 +2.6
194,963 + Atu5198 0.86 +0.6
194,963 + Atu5198 0.86 -1.2
194,963 + Atu5198 0.86 -0.7
194,963 + Atu5198 0.86 +0.2
194,963 + Atu5198 0.86 +0.1
194,971 - Atu5198 0.87 +0.8
194,971 - Atu5198 0.87 -0.3
194,971 - Atu5198 0.87 -0.4
194,971 - Atu5198 0.87 +1.5
194,971 - Atu5198 0.87 +0.3
194,971 - Atu5198 0.87 -0.1
194,971 - Atu5198 0.87 +2.2
194,971 - Atu5198 0.87 -0.1
194,971 - Atu5198 0.87 +0.5
195,085 - +0.6
195,164 + -0.5
195,239 + +2.0
195,269 + -0.5
195,317 - +0.2
195,357 + Atu5199 0.11 -0.3
195,362 + Atu5199 0.12 +1.2
195,362 + Atu5199 0.12 +0.6
195,369 - Atu5199 0.12 +1.3
195,370 - Atu5199 0.13 +0.7
195,400 + Atu5199 0.15 +1.4
195,445 - Atu5199 0.19 -0.2
195,507 - Atu5199 0.25 +0.8
195,529 + Atu5199 0.27 -0.2
195,597 - Atu5199 0.33 +0.3
195,734 - Atu5199 0.46 +0.3
195,969 + Atu5199 0.67 -1.7
195,974 + Atu5199 0.67 +0.1
196,026 - Atu5199 0.72 +0.1
196,043 + Atu5199 0.74 +0.3

Or see this region's nucleotide sequence