Experiment: Nicotinamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5185 and Atu5186 overlap by 20 nucleotides Atu5186 and Atu5187 are separated by 106 nucleotides Atu5187 and Atu5188 are separated by 194 nucleotides
Atu5185: Atu5185 - short chain dehydrogenase, at 181,939 to 182,703
Atu5185
Atu5186: Atu5186 - hypothetical protein, at 182,684 to 182,869
Atu5186
Atu5187: Atu5187 - LysR family transcriptional regulator, at 182,976 to 183,902
Atu5187
Atu5188: Atu5188 - zinc-binding dehydrogenase, at 184,097 to 185,083
Atu5188
Position (kb) 182
183
184 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 181.988 kb on + strand at 182.059 kb on - strand, within Atu5185 at 182.059 kb on - strand, within Atu5185 at 182.091 kb on + strand, within Atu5185 at 182.099 kb on - strand, within Atu5185 at 182.139 kb on + strand, within Atu5185 at 182.147 kb on - strand, within Atu5185 at 182.205 kb on + strand, within Atu5185 at 182.338 kb on + strand, within Atu5185 at 182.346 kb on - strand, within Atu5185 at 182.348 kb on + strand, within Atu5185 at 182.407 kb on - strand, within Atu5185 at 182.498 kb on + strand, within Atu5185 at 182.500 kb on - strand, within Atu5185 at 182.533 kb on + strand, within Atu5185 at 182.533 kb on + strand, within Atu5185 at 182.541 kb on - strand, within Atu5185 at 182.541 kb on - strand, within Atu5185 at 182.541 kb on - strand, within Atu5185 at 182.541 kb on - strand, within Atu5185 at 182.574 kb on - strand, within Atu5185 at 182.665 kb on + strand at 182.787 kb on - strand, within Atu5186 at 182.851 kb on + strand at 182.958 kb on - strand at 182.985 kb on - strand at 182.987 kb on + strand at 183.007 kb on + strand at 183.024 kb on - strand at 183.072 kb on + strand, within Atu5187 at 183.089 kb on + strand, within Atu5187 at 183.113 kb on + strand, within Atu5187 at 183.124 kb on - strand, within Atu5187 at 183.195 kb on + strand, within Atu5187 at 183.236 kb on + strand, within Atu5187 at 183.236 kb on + strand, within Atu5187 at 183.238 kb on + strand, within Atu5187 at 183.244 kb on - strand, within Atu5187 at 183.246 kb on - strand, within Atu5187 at 183.345 kb on - strand, within Atu5187 at 183.469 kb on + strand, within Atu5187 at 183.469 kb on + strand, within Atu5187 at 183.471 kb on + strand, within Atu5187 at 183.472 kb on - strand, within Atu5187 at 183.472 kb on - strand, within Atu5187 at 183.509 kb on + strand, within Atu5187 at 183.554 kb on - strand, within Atu5187 at 183.567 kb on - strand, within Atu5187 at 183.630 kb on + strand, within Atu5187 at 183.714 kb on + strand, within Atu5187 at 183.800 kb on - strand, within Atu5187 at 183.824 kb on + strand at 183.839 kb on + strand at 183.839 kb on + strand at 183.860 kb on + strand at 183.866 kb on - strand at 183.881 kb on + strand at 184.128 kb on + strand at 184.128 kb on + strand at 184.136 kb on - strand at 184.137 kb on + strand at 184.203 kb on - strand, within Atu5188 at 184.203 kb on - strand, within Atu5188 at 184.281 kb on + strand, within Atu5188 at 184.297 kb on - strand, within Atu5188 at 184.361 kb on + strand, within Atu5188 at 184.369 kb on - strand, within Atu5188 at 184.514 kb on + strand, within Atu5188 at 184.522 kb on - strand, within Atu5188 at 184.522 kb on - strand, within Atu5188 at 184.522 kb on - strand, within Atu5188 at 184.522 kb on - strand, within Atu5188 at 184.568 kb on - strand, within Atu5188 at 184.599 kb on + strand, within Atu5188 at 184.606 kb on + strand, within Atu5188 at 184.607 kb on - strand, within Atu5188 at 184.607 kb on - strand, within Atu5188 at 184.736 kb on - strand, within Atu5188 at 184.764 kb on + strand, within Atu5188 at 184.784 kb on - strand, within Atu5188 at 184.784 kb on - strand, within Atu5188 at 184.897 kb on - strand, within Atu5188 at 184.897 kb on - strand, within Atu5188
Per-strain Table
Position Strand Gene LocusTag Fraction Nicotinamide (N) remove 181,988 + +0.6 182,059 - Atu5185 0.16 +0.2 182,059 - Atu5185 0.16 -0.1 182,091 + Atu5185 0.20 -0.6 182,099 - Atu5185 0.21 -0.2 182,139 + Atu5185 0.26 +0.9 182,147 - Atu5185 0.27 -0.9 182,205 + Atu5185 0.35 +0.4 182,338 + Atu5185 0.52 -0.3 182,346 - Atu5185 0.53 +0.6 182,348 + Atu5185 0.53 -0.4 182,407 - Atu5185 0.61 +0.7 182,498 + Atu5185 0.73 +1.9 182,500 - Atu5185 0.73 +2.6 182,533 + Atu5185 0.78 +0.0 182,533 + Atu5185 0.78 +0.1 182,541 - Atu5185 0.79 +0.9 182,541 - Atu5185 0.79 -0.4 182,541 - Atu5185 0.79 +0.5 182,541 - Atu5185 0.79 -0.3 182,574 - Atu5185 0.83 -0.8 182,665 + +1.2 182,787 - Atu5186 0.55 -0.5 182,851 + -0.6 182,958 - -0.1 182,985 - +0.4 182,987 + +0.6 183,007 + +1.7 183,024 - +0.3 183,072 + Atu5187 0.10 +0.5 183,089 + Atu5187 0.12 -0.0 183,113 + Atu5187 0.15 +1.0 183,124 - Atu5187 0.16 +0.8 183,195 + Atu5187 0.24 +0.2 183,236 + Atu5187 0.28 +4.2 183,236 + Atu5187 0.28 +1.2 183,238 + Atu5187 0.28 -0.4 183,244 - Atu5187 0.29 +0.4 183,246 - Atu5187 0.29 +1.6 183,345 - Atu5187 0.40 +1.1 183,469 + Atu5187 0.53 +0.7 183,469 + Atu5187 0.53 -0.4 183,471 + Atu5187 0.53 +3.7 183,472 - Atu5187 0.54 +0.9 183,472 - Atu5187 0.54 -0.7 183,509 + Atu5187 0.57 +1.4 183,554 - Atu5187 0.62 +0.3 183,567 - Atu5187 0.64 -0.3 183,630 + Atu5187 0.71 +0.6 183,714 + Atu5187 0.80 +0.3 183,800 - Atu5187 0.89 -0.3 183,824 + -0.9 183,839 + -1.2 183,839 + +0.4 183,860 + +2.6 183,866 - -0.0 183,881 + +1.4 184,128 + +0.2 184,128 + -1.0 184,136 - +0.3 184,137 + +1.9 184,203 - Atu5188 0.11 +1.2 184,203 - Atu5188 0.11 -0.0 184,281 + Atu5188 0.19 +1.7 184,297 - Atu5188 0.20 +1.4 184,361 + Atu5188 0.27 +1.7 184,369 - Atu5188 0.28 +2.2 184,514 + Atu5188 0.42 +1.0 184,522 - Atu5188 0.43 +2.2 184,522 - Atu5188 0.43 -0.0 184,522 - Atu5188 0.43 +0.1 184,522 - Atu5188 0.43 +0.5 184,568 - Atu5188 0.48 +0.3 184,599 + Atu5188 0.51 -0.8 184,606 + Atu5188 0.52 +1.4 184,607 - Atu5188 0.52 +0.4 184,607 - Atu5188 0.52 +0.2 184,736 - Atu5188 0.65 -0.1 184,764 + Atu5188 0.68 +1.7 184,784 - Atu5188 0.70 +0.8 184,784 - Atu5188 0.70 -1.1 184,897 - Atu5188 0.81 -0.0 184,897 - Atu5188 0.81 -0.3
Or see this region's nucleotide sequence