Strain Fitness in Agrobacterium fabrum C58 around Atu0860

Experiment: Nicotinamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0857 and Atu0858 overlap by 47 nucleotidesAtu0858 and Atu0859 overlap by 4 nucleotidesAtu0859 and Atu0860 are separated by 57 nucleotidesAtu0860 and Atu0861 are separated by 40 nucleotidesAtu0861 and Atu0862 are separated by 88 nucleotidesAtu0862 and Atu0863 are separated by 7 nucleotides Atu0857: Atu0857 - oxidoreductase, at 856,749 to 857,471 Atu0857 Atu0858: Atu0858 - putative carboxymuconolactone decarboxylase, at 857,425 to 857,958 Atu0858 Atu0859: Atu0859 - hypothetical protein, at 857,955 to 858,305 Atu0859 Atu0860: Atu0860 - hypothetical protein, at 858,363 to 859,925 Atu0860 Atu0861: Atu0861 - hypothetical protein, at 859,966 to 860,151 Atu0861 Atu0862: Atu0862 - hypothetical protein, at 860,240 to 860,635 Atu0862 Atu0863: Atu0863 - hypothetical protein, at 860,643 to 861,074 Atu0863 Position (kb) 858 859 860Strain fitness (log2 ratio) -1 0 1 2at 857.378 kb on - strand, within Atu0857at 857.536 kb on - strand, within Atu0858at 857.554 kb on - strand, within Atu0858at 857.564 kb on - strand, within Atu0858at 857.649 kb on - strand, within Atu0858at 857.676 kb on + strand, within Atu0858at 857.677 kb on + strand, within Atu0858at 857.684 kb on - strand, within Atu0858at 857.684 kb on - strand, within Atu0858at 857.691 kb on - strand, within Atu0858at 857.702 kb on - strand, within Atu0858at 857.718 kb on - strand, within Atu0858at 857.757 kb on + strand, within Atu0858at 857.792 kb on - strand, within Atu0858at 857.878 kb on - strand, within Atu0858at 857.878 kb on - strand, within Atu0858at 858.058 kb on - strand, within Atu0859at 858.108 kb on + strand, within Atu0859at 858.108 kb on + strand, within Atu0859at 858.177 kb on + strand, within Atu0859at 858.187 kb on + strand, within Atu0859at 858.340 kb on - strandat 858.368 kb on + strandat 858.376 kb on - strandat 858.422 kb on - strandat 858.422 kb on - strandat 858.526 kb on - strand, within Atu0860at 858.537 kb on - strand, within Atu0860at 858.755 kb on - strand, within Atu0860at 858.806 kb on + strand, within Atu0860at 858.808 kb on + strand, within Atu0860at 858.819 kb on + strand, within Atu0860at 858.920 kb on + strand, within Atu0860at 858.920 kb on + strand, within Atu0860at 858.920 kb on + strand, within Atu0860at 858.920 kb on + strand, within Atu0860at 858.920 kb on + strand, within Atu0860at 858.928 kb on - strand, within Atu0860at 858.928 kb on - strand, within Atu0860at 858.928 kb on - strand, within Atu0860at 858.996 kb on - strand, within Atu0860at 859.029 kb on - strand, within Atu0860at 859.089 kb on - strand, within Atu0860at 859.089 kb on - strand, within Atu0860at 859.202 kb on + strand, within Atu0860at 859.264 kb on - strand, within Atu0860at 859.270 kb on + strand, within Atu0860at 859.338 kb on + strand, within Atu0860at 859.352 kb on + strand, within Atu0860at 859.352 kb on + strand, within Atu0860at 859.408 kb on - strand, within Atu0860at 859.473 kb on - strand, within Atu0860at 859.497 kb on + strand, within Atu0860at 859.519 kb on + strand, within Atu0860at 859.551 kb on - strand, within Atu0860at 859.607 kb on - strand, within Atu0860at 859.692 kb on + strand, within Atu0860at 859.723 kb on - strand, within Atu0860at 859.792 kb on + strandat 859.792 kb on + strandat 859.818 kb on + strandat 859.875 kb on + strandat 859.900 kb on + strandat 859.925 kb on - strandat 860.025 kb on - strand, within Atu0861at 860.053 kb on + strand, within Atu0861at 860.146 kb on + strandat 860.154 kb on - strandat 860.283 kb on + strand, within Atu0862at 860.291 kb on - strand, within Atu0862at 860.291 kb on - strand, within Atu0862at 860.404 kb on + strand, within Atu0862at 860.404 kb on + strand, within Atu0862at 860.404 kb on + strand, within Atu0862at 860.412 kb on - strand, within Atu0862at 860.412 kb on - strand, within Atu0862at 860.412 kb on - strand, within Atu0862at 860.412 kb on - strand, within Atu0862at 860.412 kb on - strand, within Atu0862at 860.539 kb on + strand, within Atu0862at 860.612 kb on - strandat 860.616 kb on + strandat 860.626 kb on + strandat 860.724 kb on + strand, within Atu0863at 860.732 kb on - strand, within Atu0863at 860.742 kb on - strand, within Atu0863at 860.759 kb on + strand, within Atu0863at 860.760 kb on + strand, within Atu0863at 860.762 kb on + strand, within Atu0863at 860.865 kb on + strand, within Atu0863

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Per-strain Table

Position Strand Gene LocusTag Fraction Nicotinamide (N)
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857,378 - Atu0857 0.87 +0.1
857,536 - Atu0858 0.21 -0.2
857,554 - Atu0858 0.24 -0.1
857,564 - Atu0858 0.26 -0.5
857,649 - Atu0858 0.42 +0.4
857,676 + Atu0858 0.47 +0.4
857,677 + Atu0858 0.47 -0.8
857,684 - Atu0858 0.49 +0.2
857,684 - Atu0858 0.49 +0.4
857,691 - Atu0858 0.50 +2.1
857,702 - Atu0858 0.52 -0.1
857,718 - Atu0858 0.55 +0.4
857,757 + Atu0858 0.62 +0.8
857,792 - Atu0858 0.69 +0.2
857,878 - Atu0858 0.85 -0.4
857,878 - Atu0858 0.85 +0.4
858,058 - Atu0859 0.29 -0.1
858,108 + Atu0859 0.44 +0.8
858,108 + Atu0859 0.44 +1.0
858,177 + Atu0859 0.63 +0.0
858,187 + Atu0859 0.66 -0.1
858,340 - -0.3
858,368 + +1.6
858,376 - +0.2
858,422 - +1.0
858,422 - +0.1
858,526 - Atu0860 0.10 +0.3
858,537 - Atu0860 0.11 -1.0
858,755 - Atu0860 0.25 +0.9
858,806 + Atu0860 0.28 -0.5
858,808 + Atu0860 0.28 +1.2
858,819 + Atu0860 0.29 +0.2
858,920 + Atu0860 0.36 +0.3
858,920 + Atu0860 0.36 +0.3
858,920 + Atu0860 0.36 +0.6
858,920 + Atu0860 0.36 +0.2
858,920 + Atu0860 0.36 -0.3
858,928 - Atu0860 0.36 +0.5
858,928 - Atu0860 0.36 +1.8
858,928 - Atu0860 0.36 +0.5
858,996 - Atu0860 0.40 +1.0
859,029 - Atu0860 0.43 +1.2
859,089 - Atu0860 0.46 +0.8
859,089 - Atu0860 0.46 +0.6
859,202 + Atu0860 0.54 -0.4
859,264 - Atu0860 0.58 +0.7
859,270 + Atu0860 0.58 +0.4
859,338 + Atu0860 0.62 +0.6
859,352 + Atu0860 0.63 +1.2
859,352 + Atu0860 0.63 +0.1
859,408 - Atu0860 0.67 +0.5
859,473 - Atu0860 0.71 +0.7
859,497 + Atu0860 0.73 +0.4
859,519 + Atu0860 0.74 +0.8
859,551 - Atu0860 0.76 +1.1
859,607 - Atu0860 0.80 +0.0
859,692 + Atu0860 0.85 -0.2
859,723 - Atu0860 0.87 -0.2
859,792 + -0.7
859,792 + -0.0
859,818 + +0.8
859,875 + +0.1
859,900 + +0.8
859,925 - -0.5
860,025 - Atu0861 0.32 +0.5
860,053 + Atu0861 0.47 -0.6
860,146 + -0.1
860,154 - -0.3
860,283 + Atu0862 0.11 +0.2
860,291 - Atu0862 0.13 +1.3
860,291 - Atu0862 0.13 +0.7
860,404 + Atu0862 0.41 +0.9
860,404 + Atu0862 0.41 +1.5
860,404 + Atu0862 0.41 +0.1
860,412 - Atu0862 0.43 +0.2
860,412 - Atu0862 0.43 -0.7
860,412 - Atu0862 0.43 +0.8
860,412 - Atu0862 0.43 -0.7
860,412 - Atu0862 0.43 -0.2
860,539 + Atu0862 0.76 +0.8
860,612 - +1.4
860,616 + -0.0
860,626 + -1.1
860,724 + Atu0863 0.19 +0.2
860,732 - Atu0863 0.21 +0.3
860,742 - Atu0863 0.23 +0.3
860,759 + Atu0863 0.27 +0.3
860,760 + Atu0863 0.27 +0.0
860,762 + Atu0863 0.28 +0.9
860,865 + Atu0863 0.51 +1.4

Or see this region's nucleotide sequence