Strain Fitness in Agrobacterium fabrum C58 around Atu0213

Experiment: Nicotinamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0211 and Atu0212 are separated by 95 nucleotidesAtu0212 and Atu0213 are separated by 191 nucleotidesAtu0213 and Atu0214 are separated by 58 nucleotides Atu0211: Atu0211 - hypothetical protein, at 215,616 to 216,467 Atu0211 Atu0212: Atu0212 - hypothetical protein, at 216,563 to 216,922 Atu0212 Atu0213: Atu0213 - nicotinate phosphoribosyltransferase, at 217,114 to 218,418 Atu0213 Atu0214: Atu0214 - leucine aminopeptidase, at 218,477 to 219,871 Atu0214 Position (kb) 217 218 219Strain fitness (log2 ratio) -1 0 1 2at 216.157 kb on - strand, within Atu0211at 216.236 kb on - strand, within Atu0211at 216.497 kb on - strandat 216.515 kb on + strandat 216.533 kb on - strandat 216.533 kb on - strandat 216.608 kb on + strand, within Atu0212at 216.718 kb on + strand, within Atu0212at 216.776 kb on - strand, within Atu0212at 216.806 kb on - strand, within Atu0212at 216.812 kb on + strand, within Atu0212at 216.883 kb on + strand, within Atu0212at 216.995 kb on + strandat 217.003 kb on - strandat 217.013 kb on - strandat 217.049 kb on - strandat 217.104 kb on - strandat 217.154 kb on - strandat 217.275 kb on + strand, within Atu0213at 217.275 kb on + strand, within Atu0213at 217.275 kb on + strand, within Atu0213at 217.275 kb on + strand, within Atu0213at 217.283 kb on - strand, within Atu0213at 217.283 kb on - strand, within Atu0213at 217.310 kb on + strand, within Atu0213at 217.310 kb on + strand, within Atu0213at 217.346 kb on + strand, within Atu0213at 217.431 kb on + strand, within Atu0213at 217.468 kb on - strand, within Atu0213at 217.608 kb on + strand, within Atu0213at 217.641 kb on - strand, within Atu0213at 217.641 kb on - strand, within Atu0213at 217.768 kb on + strand, within Atu0213at 217.776 kb on - strand, within Atu0213at 217.789 kb on + strand, within Atu0213at 217.834 kb on - strand, within Atu0213at 217.941 kb on + strand, within Atu0213at 218.034 kb on - strand, within Atu0213at 218.078 kb on + strand, within Atu0213at 218.128 kb on - strand, within Atu0213at 218.129 kb on + strand, within Atu0213at 218.145 kb on - strand, within Atu0213at 218.164 kb on - strand, within Atu0213at 218.201 kb on + strand, within Atu0213at 218.214 kb on - strand, within Atu0213at 218.236 kb on + strand, within Atu0213at 218.313 kb on - strandat 218.321 kb on - strandat 218.415 kb on - strandat 218.415 kb on - strandat 218.468 kb on - strandat 218.582 kb on + strandat 218.629 kb on - strand, within Atu0214at 218.640 kb on - strand, within Atu0214at 218.801 kb on + strand, within Atu0214at 218.807 kb on - strand, within Atu0214at 218.807 kb on - strand, within Atu0214at 218.823 kb on - strand, within Atu0214at 218.844 kb on + strand, within Atu0214at 218.872 kb on + strand, within Atu0214at 218.872 kb on + strand, within Atu0214at 218.872 kb on + strand, within Atu0214at 218.892 kb on + strand, within Atu0214at 218.892 kb on + strand, within Atu0214at 218.892 kb on + strand, within Atu0214at 218.970 kb on - strand, within Atu0214at 219.083 kb on + strand, within Atu0214at 219.084 kb on - strand, within Atu0214at 219.126 kb on + strand, within Atu0214at 219.148 kb on + strand, within Atu0214at 219.177 kb on + strand, within Atu0214at 219.253 kb on - strand, within Atu0214at 219.258 kb on - strand, within Atu0214at 219.322 kb on + strand, within Atu0214at 219.327 kb on + strand, within Atu0214at 219.327 kb on + strand, within Atu0214at 219.327 kb on + strand, within Atu0214at 219.335 kb on - strand, within Atu0214at 219.396 kb on + strand, within Atu0214

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Per-strain Table

Position Strand Gene LocusTag Fraction Nicotinamide (N)
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216,157 - Atu0211 0.63 -0.4
216,236 - Atu0211 0.73 -0.7
216,497 - +0.1
216,515 + -0.0
216,533 - +0.4
216,533 - +0.1
216,608 + Atu0212 0.12 -0.1
216,718 + Atu0212 0.43 +0.2
216,776 - Atu0212 0.59 -1.1
216,806 - Atu0212 0.68 -0.6
216,812 + Atu0212 0.69 +0.7
216,883 + Atu0212 0.89 -0.2
216,995 + -0.4
217,003 - +0.5
217,013 - +0.7
217,049 - +0.5
217,104 - +0.4
217,154 - +0.2
217,275 + Atu0213 0.12 +0.6
217,275 + Atu0213 0.12 +0.9
217,275 + Atu0213 0.12 +0.4
217,275 + Atu0213 0.12 +0.6
217,283 - Atu0213 0.13 +0.3
217,283 - Atu0213 0.13 -0.3
217,310 + Atu0213 0.15 +0.7
217,310 + Atu0213 0.15 +0.2
217,346 + Atu0213 0.18 +0.2
217,431 + Atu0213 0.24 +0.2
217,468 - Atu0213 0.27 +0.8
217,608 + Atu0213 0.38 -0.1
217,641 - Atu0213 0.40 +0.0
217,641 - Atu0213 0.40 +0.0
217,768 + Atu0213 0.50 +1.0
217,776 - Atu0213 0.51 +0.2
217,789 + Atu0213 0.52 -0.6
217,834 - Atu0213 0.55 +0.1
217,941 + Atu0213 0.63 +1.4
218,034 - Atu0213 0.70 +0.3
218,078 + Atu0213 0.74 -0.3
218,128 - Atu0213 0.78 -0.2
218,129 + Atu0213 0.78 +0.4
218,145 - Atu0213 0.79 +0.3
218,164 - Atu0213 0.80 -0.4
218,201 + Atu0213 0.83 +0.3
218,214 - Atu0213 0.84 +0.3
218,236 + Atu0213 0.86 +0.3
218,313 - -0.4
218,321 - +0.0
218,415 - +2.1
218,415 - +0.2
218,468 - +0.8
218,582 + +1.0
218,629 - Atu0214 0.11 -0.1
218,640 - Atu0214 0.12 +0.2
218,801 + Atu0214 0.23 +1.9
218,807 - Atu0214 0.24 +0.5
218,807 - Atu0214 0.24 +0.5
218,823 - Atu0214 0.25 -0.2
218,844 + Atu0214 0.26 +0.1
218,872 + Atu0214 0.28 -0.8
218,872 + Atu0214 0.28 +0.1
218,872 + Atu0214 0.28 -1.1
218,892 + Atu0214 0.30 +0.4
218,892 + Atu0214 0.30 +0.1
218,892 + Atu0214 0.30 +1.9
218,970 - Atu0214 0.35 +0.1
219,083 + Atu0214 0.43 -0.0
219,084 - Atu0214 0.44 -0.3
219,126 + Atu0214 0.47 -0.0
219,148 + Atu0214 0.48 +0.1
219,177 + Atu0214 0.50 +1.7
219,253 - Atu0214 0.56 +0.6
219,258 - Atu0214 0.56 -0.3
219,322 + Atu0214 0.61 +0.1
219,327 + Atu0214 0.61 -0.6
219,327 + Atu0214 0.61 -0.2
219,327 + Atu0214 0.61 +0.0
219,335 - Atu0214 0.62 +0.3
219,396 + Atu0214 0.66 +0.3

Or see this region's nucleotide sequence