Experiment: Nicotinamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0116 and Atu0117 are separated by 99 nucleotides Atu0117 and Atu0118 are separated by 9 nucleotides
Atu0116: Atu0116 - hypothetical protein, at 121,502 to 121,912
Atu0116
Atu0117: Atu0117 - hypothetical protein, at 122,012 to 122,473
Atu0117
Atu0118: Atu0118 - hypothetical protein, at 122,483 to 123,988
Atu0118
Position (kb) 122
123 Strain fitness (log2 ratio) -1
0
1 at 121.034 kb on + strand at 121.063 kb on + strand at 121.104 kb on + strand at 121.191 kb on + strand at 121.191 kb on + strand at 121.199 kb on - strand at 121.199 kb on - strand at 121.260 kb on - strand at 121.363 kb on - strand at 121.381 kb on + strand at 121.381 kb on + strand at 121.426 kb on - strand at 121.466 kb on - strand at 121.476 kb on - strand at 121.499 kb on + strand at 121.507 kb on - strand at 121.525 kb on + strand at 121.565 kb on - strand, within Atu0116 at 121.581 kb on - strand, within Atu0116 at 121.677 kb on + strand, within Atu0116 at 121.713 kb on - strand, within Atu0116 at 121.735 kb on + strand, within Atu0116 at 121.743 kb on - strand, within Atu0116 at 121.771 kb on - strand, within Atu0116 at 121.986 kb on - strand at 122.100 kb on - strand, within Atu0117 at 122.216 kb on + strand, within Atu0117 at 122.221 kb on + strand, within Atu0117 at 122.303 kb on - strand, within Atu0117 at 122.340 kb on + strand, within Atu0117 at 122.355 kb on + strand, within Atu0117 at 122.492 kb on - strand at 122.616 kb on + strand at 122.728 kb on + strand, within Atu0118 at 122.733 kb on - strand, within Atu0118 at 122.791 kb on + strand, within Atu0118 at 122.943 kb on + strand, within Atu0118 at 122.992 kb on + strand, within Atu0118 at 122.995 kb on - strand, within Atu0118 at 123.000 kb on - strand, within Atu0118 at 123.011 kb on - strand, within Atu0118 at 123.029 kb on - strand, within Atu0118 at 123.148 kb on + strand, within Atu0118 at 123.168 kb on + strand, within Atu0118 at 123.168 kb on + strand, within Atu0118 at 123.168 kb on + strand, within Atu0118 at 123.173 kb on + strand, within Atu0118 at 123.176 kb on - strand, within Atu0118 at 123.195 kb on + strand, within Atu0118 at 123.234 kb on + strand, within Atu0118 at 123.234 kb on + strand, within Atu0118 at 123.234 kb on + strand, within Atu0118 at 123.261 kb on + strand, within Atu0118 at 123.261 kb on + strand, within Atu0118 at 123.269 kb on - strand, within Atu0118 at 123.269 kb on - strand, within Atu0118 at 123.313 kb on + strand, within Atu0118 at 123.321 kb on - strand, within Atu0118 at 123.423 kb on + strand, within Atu0118
Per-strain Table
Position Strand Gene LocusTag Fraction Nicotinamide (N) remove 121,034 + +0.4 121,063 + -0.1 121,104 + +0.3 121,191 + -0.0 121,191 + -0.1 121,199 - -0.6 121,199 - +0.5 121,260 - -0.9 121,363 - +0.2 121,381 + -0.6 121,381 + +0.3 121,426 - +0.6 121,466 - -0.3 121,476 - +0.2 121,499 + -0.0 121,507 - +1.1 121,525 + +0.9 121,565 - Atu0116 0.15 -0.2 121,581 - Atu0116 0.19 +0.4 121,677 + Atu0116 0.43 -0.2 121,713 - Atu0116 0.51 +0.0 121,735 + Atu0116 0.57 +0.1 121,743 - Atu0116 0.59 +0.5 121,771 - Atu0116 0.65 -0.1 121,986 - +0.0 122,100 - Atu0117 0.19 -0.3 122,216 + Atu0117 0.44 -0.1 122,221 + Atu0117 0.45 -0.1 122,303 - Atu0117 0.63 -0.9 122,340 + Atu0117 0.71 -0.3 122,355 + Atu0117 0.74 -0.4 122,492 - -0.4 122,616 + +0.6 122,728 + Atu0118 0.16 +0.5 122,733 - Atu0118 0.17 +0.6 122,791 + Atu0118 0.20 -0.1 122,943 + Atu0118 0.31 +0.3 122,992 + Atu0118 0.34 +0.4 122,995 - Atu0118 0.34 +1.0 123,000 - Atu0118 0.34 +0.7 123,011 - Atu0118 0.35 -0.3 123,029 - Atu0118 0.36 +0.0 123,148 + Atu0118 0.44 +0.3 123,168 + Atu0118 0.45 +0.0 123,168 + Atu0118 0.45 +0.6 123,168 + Atu0118 0.45 +0.7 123,173 + Atu0118 0.46 -1.1 123,176 - Atu0118 0.46 +0.8 123,195 + Atu0118 0.47 -0.3 123,234 + Atu0118 0.50 -0.6 123,234 + Atu0118 0.50 +0.3 123,234 + Atu0118 0.50 -0.3 123,261 + Atu0118 0.52 +0.3 123,261 + Atu0118 0.52 -0.0 123,269 - Atu0118 0.52 -0.1 123,269 - Atu0118 0.52 -0.0 123,313 + Atu0118 0.55 -0.1 123,321 - Atu0118 0.56 -0.1 123,423 + Atu0118 0.62 +0.5
Or see this region's nucleotide sequence