Strain Fitness in Pseudomonas putida KT2440 around PP_5SB

Experiment: Butyrolactam 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_23SB and PP_r01 are separated by 132 nucleotidesPP_r01 and PP_5SB are separated by 105 nucleotidesPP_5SB and PP_0160 are separated by 64 nucleotides PP_23SB: PP_23SB - 23S ribosomal RNA, at 178,633 to 181,534 _23SB PP_r01: PP_r01 - 5S ribosomal RNA, at 181,667 to 181,786 _r01 PP_5SB: PP_5SB - 5S ribosomal RNA, at 181,892 to 182,011 _5SB PP_0160: PP_0160 - putative ferrioxamine receptor, at 182,076 to 184,562 _0160 Position (kb) 181 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1at 181.838 kb on + strandat 181.906 kb on - strand, within PP_5SBat 181.906 kb on - strand, within PP_5SBat 181.994 kb on + strand, within PP_5SBat 182.077 kb on + strandat 182.078 kb on - strandat 182.086 kb on + strandat 182.087 kb on - strandat 182.125 kb on + strandat 182.126 kb on - strandat 182.126 kb on - strandat 182.126 kb on - strandat 182.126 kb on - strandat 182.126 kb on - strandat 182.132 kb on - strandat 182.158 kb on + strandat 182.158 kb on + strandat 182.158 kb on + strandat 182.158 kb on + strandat 182.158 kb on + strandat 182.158 kb on + strandat 182.159 kb on - strandat 182.159 kb on - strandat 182.159 kb on - strandat 182.171 kb on + strandat 182.171 kb on - strandat 182.172 kb on - strandat 182.172 kb on - strandat 182.231 kb on - strandat 182.257 kb on + strandat 182.257 kb on + strandat 182.258 kb on - strandat 182.258 kb on - strandat 182.258 kb on - strandat 182.308 kb on + strandat 182.308 kb on + strandat 182.309 kb on - strandat 182.309 kb on - strandat 182.309 kb on - strandat 182.309 kb on - strandat 182.360 kb on + strand, within PP_0160at 182.360 kb on + strand, within PP_0160at 182.362 kb on + strand, within PP_0160at 182.362 kb on + strand, within PP_0160at 182.362 kb on + strand, within PP_0160at 182.362 kb on + strand, within PP_0160at 182.363 kb on - strand, within PP_0160at 182.411 kb on + strand, within PP_0160at 182.411 kb on + strand, within PP_0160at 182.411 kb on + strand, within PP_0160at 182.462 kb on - strand, within PP_0160at 182.480 kb on + strand, within PP_0160at 182.480 kb on + strand, within PP_0160at 182.480 kb on + strand, within PP_0160at 182.480 kb on + strand, within PP_0160at 182.481 kb on - strand, within PP_0160at 182.481 kb on - strand, within PP_0160at 182.481 kb on - strand, within PP_0160at 182.481 kb on - strand, within PP_0160at 182.482 kb on + strand, within PP_0160at 182.483 kb on - strand, within PP_0160at 182.483 kb on - strand, within PP_0160at 182.569 kb on + strand, within PP_0160at 182.569 kb on + strand, within PP_0160at 182.569 kb on + strand, within PP_0160at 182.570 kb on - strand, within PP_0160at 182.662 kb on + strand, within PP_0160at 182.662 kb on + strand, within PP_0160at 182.663 kb on - strand, within PP_0160at 182.663 kb on - strand, within PP_0160at 182.663 kb on - strand, within PP_0160at 182.792 kb on - strand, within PP_0160at 182.792 kb on - strand, within PP_0160at 182.985 kb on + strand, within PP_0160at 183.007 kb on + strand, within PP_0160

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Per-strain Table

Position Strand Gene LocusTag Fraction Butyrolactam 2 vol%
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181,838 + -0.2
181,906 - PP_5SB 0.12 -0.8
181,906 - PP_5SB 0.12 -0.5
181,994 + PP_5SB 0.85 -1.7
182,077 + +1.6
182,078 - -0.5
182,086 + -0.5
182,087 - -0.6
182,125 + +0.4
182,126 - -0.8
182,126 - +0.4
182,126 - -0.9
182,126 - +1.2
182,126 - -1.1
182,132 - -0.3
182,158 + +0.2
182,158 + +0.4
182,158 + -0.0
182,158 + +0.0
182,158 + +0.4
182,158 + -1.5
182,159 - -0.4
182,159 - -2.1
182,159 - +0.1
182,171 + -0.3
182,171 - -1.8
182,172 - -1.1
182,172 - +0.6
182,231 - +0.8
182,257 + -0.1
182,257 + -0.9
182,258 - -0.5
182,258 - +0.1
182,258 - +0.2
182,308 + -1.4
182,308 + -1.4
182,309 - -2.1
182,309 - +1.0
182,309 - -0.2
182,309 - -0.9
182,360 + PP_0160 0.11 +0.4
182,360 + PP_0160 0.11 -1.0
182,362 + PP_0160 0.11 -0.3
182,362 + PP_0160 0.11 -1.4
182,362 + PP_0160 0.11 -1.0
182,362 + PP_0160 0.11 -0.4
182,363 - PP_0160 0.12 +0.2
182,411 + PP_0160 0.13 +0.2
182,411 + PP_0160 0.13 -0.6
182,411 + PP_0160 0.13 -0.8
182,462 - PP_0160 0.16 +0.5
182,480 + PP_0160 0.16 -1.1
182,480 + PP_0160 0.16 -0.9
182,480 + PP_0160 0.16 +0.5
182,480 + PP_0160 0.16 +0.2
182,481 - PP_0160 0.16 -0.5
182,481 - PP_0160 0.16 +0.2
182,481 - PP_0160 0.16 +0.5
182,481 - PP_0160 0.16 -0.3
182,482 + PP_0160 0.16 -0.4
182,483 - PP_0160 0.16 -2.8
182,483 - PP_0160 0.16 +0.7
182,569 + PP_0160 0.20 -1.2
182,569 + PP_0160 0.20 -0.4
182,569 + PP_0160 0.20 -1.3
182,570 - PP_0160 0.20 -0.3
182,662 + PP_0160 0.24 +0.4
182,662 + PP_0160 0.24 +0.0
182,663 - PP_0160 0.24 +0.3
182,663 - PP_0160 0.24 -0.5
182,663 - PP_0160 0.24 -0.3
182,792 - PP_0160 0.29 -0.8
182,792 - PP_0160 0.29 -2.0
182,985 + PP_0160 0.37 -0.8
183,007 + PP_0160 0.37 +0.2

Or see this region's nucleotide sequence