Strain Fitness in Pseudomonas putida KT2440 around PP_5667

Experiment: Butyrolactam 2 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butyrolactam 2 vol%
4,812,692	-				-0.8
4,813,050	+		PP_5666	0.32	+1.6
4,813,149	-		PP_5666	0.43	-0.9
4,813,168	+		PP_5666	0.46	+0.0
4,813,229	-		PP_5666	0.53	+0.3
4,813,353	-		PP_5666	0.67	-0.0
4,813,475	-		PP_5666	0.81	-0.2
4,813,632	-				-0.5
4,813,721	+		PP_5667	0.11	-1.7
4,813,721	+		PP_5667	0.11	-0.1
4,813,962	+		PP_5667	0.41	-1.0
4,814,203	+		PP_5667	0.71	-1.3
4,814,207	+		PP_5667	0.72	-1.6
4,814,241	-				+1.0
4,814,288	+		PP_5667	0.82	-0.7
4,814,349	-				-1.0
4,814,350	+				+0.5
4,814,486	+				+0.3
4,814,547	+				-0.3
4,814,547	+				+0.4
4,814,656	+		PP_4240	0.19	+0.3
4,814,772	+		PP_4240	0.28	+0.2
4,814,864	+		PP_4240	0.36	+0.2
4,814,897	+		PP_4240	0.39	-0.8
4,815,084	-		PP_4240	0.54	+0.6
4,815,125	-		PP_4240	0.58	+0.5
4,815,130	-		PP_4240	0.58	-0.3
4,815,130	-		PP_4240	0.58	-0.5
4,815,181	-		PP_4240	0.62	+0.8